SMTL ID : 7xhk.1

High-resolution X-ray cocrystal structure of USP7 in complex with LX04-46

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x DVU: ~{N}-[[4-[6-[[1-[[2-chloranyl-4-(furan-2-yl)phenyl]methyl]-4-oxidanyl-piperidin-4-yl]methyl]-2-methyl-7-oxidanylidene-pyrazolo[4,3-d]pyrimidin-3-yl]phenyl]methyl]methanamide(Non-covalent)

DVU.1: 19 residues within 4Å: Chain A: Y.18, D.89, V.90, Q.91, Q.145, L.200, M.201, R.202, F.203, H.204, N.212, I.213, K.214, H.250, D.253, N.254, H.255, Y.259, Y.308 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.18, A:V.90, A:F.203, A:F.203, A:Y.308 Hydrogen bonds: A:D.89, A:D.89, A:V.90, A:Q.91, A:R.202, A:F.203 Water bridges: A:Y.259 pi-Stacking: A:H.250, A:H.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wen, X.A., High-resolution X-ray cocrystal structure of USP7 in complex with LX04-46. To Be Published

Release Date

2023-06-14

Peptides

Ubiquitin carboxyl-terminal hydrolase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ubiquitin carboxyl-terminal hydrolase 7