SMTL ID : 7xib.1

Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-disordered form)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.1126, C.1128, C.1135, H.1152 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1126, A:C.1128, A:C.1135, A:H.1152 ZN.2: 4 residues within 4Å: Chain A: H.443, C.470, C.543, C.546 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.443, A:C.470, A:C.543, A:C.546

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kikuchi, A. et al., Structural basis for activation of DNMT1. Nat Commun (2022)

Release Date

2022-11-30

Peptides

DNA (cytosine-5)-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA (cytosine-5)-methyltransferase 1

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