- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)
- 4 x SPD: SPERMIDINE(Non-covalent)
SPD.2: 14 residues within 4Å:- Chain A: E.32, Y.75, I.76, Q.77, Y.86, H.87, E.111, D.184, L.185, D.187, Q.219, F.254, Y.256
- Ligands: MTA.1
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:Q.77, A:F.254
- Hydrogen bonds: A:E.32, A:H.87
- Water bridges: A:E.32, A:E.111, A:F.254
SPD.4: 14 residues within 4Å:- Chain B: E.32, Y.75, I.76, Q.77, Y.86, H.87, E.111, D.184, L.185, D.187, Q.219, F.254, Y.256
- Ligands: MTA.3
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:Q.77, B:F.254
- Hydrogen bonds: B:Y.86, B:H.87
- Water bridges: B:E.32, B:D.184, B:F.254
SPD.6: 14 residues within 4Å:- Chain C: E.32, Y.75, I.76, Q.77, Y.86, H.87, E.111, D.184, L.185, D.187, Q.219, F.254, Y.256
- Ligands: MTA.5
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:Q.77, C:F.254
- Hydrogen bonds: C:H.87
- Water bridges: C:E.32, C:E.111, C:F.254
SPD.8: 14 residues within 4Å:- Chain D: E.32, Y.75, I.76, Q.77, Y.86, H.87, E.111, D.184, L.185, D.187, Q.219, F.254, Y.256
- Ligands: MTA.7
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:Q.77, D:F.254
- Hydrogen bonds: D:E.32, D:Y.86, D:H.87
- Water bridges: D:E.32, D:T.114, D:F.254
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fukuda, W. et al., Substrate Specificity of an Aminopropyltransferase and the Biosynthesis Pathway of Polyamines in the Hyperthermophilic Crenarchaeon Pyrobaculum calidifontis. Catalysts (2022)
- Release Date
- 2022-06-15
- Peptides
- Polyamine aminopropyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)
- 4 x SPD: SPERMIDINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fukuda, W. et al., Substrate Specificity of an Aminopropyltransferase and the Biosynthesis Pathway of Polyamines in the Hyperthermophilic Crenarchaeon Pyrobaculum calidifontis. Catalysts (2022)
- Release Date
- 2022-06-15
- Peptides
- Polyamine aminopropyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B