SMTL ID : 7xij.1

Crystal structure of CBP bromodomain liganded with Y08175

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x EJ3: 3-[(1-ethanoyl-5-methoxy-indol-3-yl)carbonylamino]-4-fluoranyl-5-(1-methylpyrazol-4-yl)benzoic acid(Non-covalent)

EJ3.1: 10 residues within 4Å: Chain A: L.48, P.49, F.50, Q.52, V.54, L.58, L.59, I.61, N.107, V.113 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.50, A:V.54, A:L.59, A:I.61, A:V.113 Hydrogen bonds: A:P.49, A:Q.52, A:N.107

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: K.80, Q.85, Y.86, Q.87, Q.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.80

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain A: R.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.20 GOL.4: 1 residues within 4Å: Chain A: R.42 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, Q. et al., Crystal structure of CBP bromodomain liganded with Y08175. To Be Published

Release Date

2022-06-08

Peptides

Isoform 2 of CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2 of CREB-binding protein