SMTL ID : 7xiz.1

SARS-CoV-2 Omicron BA.3 variant spike (local)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.9, Q.258, T.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.9 NAG.2: 3 residues within 4Å: Chain A: D.17, N.21, F.49 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, Y. et al., BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature (2022)

Release Date

2022-07-13

Peptides

Spike protein S1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Spike protein S1