SMTL ID : 7xj2.1

Structure of human TRPV3_G573S in complex with Trpvicin in C4 symmetry

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x EQK: N-[5-[2-(2-cyanopropan-2-yl)pyridin-4-yl]-4-(trifluoromethyl)-1,3-thiazol-2-yl]-4,6-dimethoxy-pyrimidine-5-carboxamide(Non-covalent)

EQK.1: 12 residues within 4Å: Chain A: A.556, L.557, W.559, A.560, I.583 Chain B: V.596, F.597, G.600, F.601, F.656, T.660, L.664 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.559, A:I.583, B:F.597, B:T.660 Hydrogen bonds: A:A.556, A:A.560 EQK.2: 14 residues within 4Å: Chain B: L.553, M.555, A.556, L.557, W.559, A.560, I.583 Chain D: V.596, F.597, G.600, F.601, F.656, T.660, L.664 7 PLIP interactions: 4 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:F.601, D:F.656, D:T.660, D:L.664, B:W.559, B:I.583, B:I.583 EQK.3: 13 residues within 4Å: Chain A: V.596, F.597, G.600, F.601, F.656, T.660, L.664 Chain C: L.553, A.556, L.557, W.559, A.560, I.583 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:W.559, C:I.583, A:F.601, A:T.660 Hydrogen bonds: C:A.556 EQK.4: 13 residues within 4Å: Chain C: V.596, F.597, G.600, F.601, F.656, T.660, L.664 Chain D: A.556, L.557, W.559, A.560, I.583, L.588 7 PLIP interactions: 4 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:W.559, D:I.583, D:L.588, C:F.656, C:T.660, C:L.664 Hydrogen bonds: D:A.556

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, J. et al., Structural basis of TRPV3 inhibition by an antagonist. Nat.Chem.Biol. (2023)

Release Date

2022-11-09

Peptides

Fusion protein of Transient receptor potential cation channel subfamily V member 3 and 3C-GFP: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

D
D

Membrane

We predict this structure to be a membrane protein.
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Fusion protein of Transient receptor potential cation channel subfamily V member 3 and 3C-GFP

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