SMTL ID : 7xj3.1

Structure of human TRPV3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

14 x 6OU: [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate(Non-covalent)(Non-functional Binders)

6OU.1: 5 residues within 4Å: Chain A: L.591, I.595, S.626 Chain B: I.659 Ligands: 6OU.2 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.591, A:I.595, B:I.659 6OU.2: 2 residues within 4Å: Chain A: F.625 Ligands: 6OU.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.625 6OU.3: 1 residues within 4Å: Chain A: V.458 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.458 6OU.4: 1 residues within 4Å: Chain B: F.656 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.656 6OU.5: 1 residues within 4Å: Ligands: 6OU.6 No protein-ligand interaction detected (PLIP) 6OU.6: 6 residues within 4Å: Chain B: I.595, V.629 Chain D: L.655, I.659 Ligands: 6OU.5, 6OU.13 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:I.595, D:L.655, D:I.659 6OU.7: 1 residues within 4Å: Chain B: T.454 No protein-ligand interaction detected (PLIP) 6OU.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) 6OU.9: 4 residues within 4Å: Chain A: L.655 Chain C: I.595, S.626 Ligands: 6OU.10 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.655, C:I.595 6OU.10: 3 residues within 4Å: Chain C: I.595, F.625 Ligands: 6OU.9 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.595, C:F.625 6OU.11: 1 residues within 4Å: Chain C: F.656 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.656 6OU.12: 5 residues within 4Å: Chain D: L.591, Y.594, I.595, S.626, V.629 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:L.591, D:Y.594, D:I.595, D:V.629 6OU.13: 4 residues within 4Å: Chain D: I.652, F.656, I.659 Ligands: 6OU.6 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:I.652, D:F.656, D:I.659 6OU.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, J. et al., Structural basis of TRPV3 inhibition by an antagonist. Nat.Chem.Biol. (2023)

Release Date

2022-11-09

Peptides

fusion of transient receptor potential cation channel subfamily V member 3 and 3C-GFP: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

D
D

Membrane

We predict this structure to be a membrane protein.
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fusion of transient receptor potential cation channel subfamily V member 3 and 3C-GFP

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