SMTL ID : 7xjp.1

Cryo-EM structure of EDS1 and SAG101 with ATP-APDR

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 5 residues within 4Å: Chain A: W.18, H.122, P.213, H.318, E.321 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.18, A:P.213, A:H.318

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.2: 20 residues within 4Å: Chain A: N.422, R.425, D.469, N.472, Y.473, R.475, H.476, K.478, Y.485, G.489 Chain B: K.301, M.304, A.305, E.308, S.377, N.380, M.384, D.436, L.438 Ligands: ATP.3 15 PLIP interactions: 3 interactions with chain B, 12 interactions with chain A Hydrogen bonds: B:D.436, A:N.422, A:D.469, A:D.469, A:N.472, A:R.475, A:H.476, A:K.478, A:G.489 Salt bridges: B:K.301, B:K.301, A:R.425, A:K.478 pi-Stacking: A:H.476, A:H.476

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 14 residues within 4Å: Chain A: K.440, Y.473, K.478, T.482, G.489, P.491, T.492, R.493 Chain B: K.371, R.372, R.373, F.376, N.380 Ligands: APR.2 15 PLIP interactions: 7 interactions with chain A, 8 interactions with chain B Hydrogen bonds: A:T.482, A:T.492, A:T.492, A:T.492, A:R.493, A:R.493, B:R.372, B:R.373, B:N.380 Salt bridges: A:K.440, B:R.372, B:R.372, B:R.372, B:R.373, B:R.373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, A. et al., TIR-catalyzed ADP-ribosylation reactions produce signaling molecules for plant immunity. Science (2022)

Release Date

2022-07-20

Peptides

Protein EDS1: A
Senescence-associated carboxylesterase 101: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein EDS1

Senescence-associated carboxylesterase 101

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