SMTL ID : 7xki.1

Human Cx36/GJD2 (N-terminal deletion BRIL-fused mutant) gap junction channel in soybean lipids (D6 symmetry)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

48 x MC3: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE(Non-functional Binders)(Non-covalent)

MC3.1: 2 residues within 4Å: Chain A: F.235, S.236 Ligand excluded by PLIP MC3.2: 4 residues within 4Å: Chain A: T.260, T.263, V.264 Ligands: MC3.23 Ligand excluded by PLIP MC3.3: 2 residues within 4Å: Ligands: MC3.4, MC3.6 Ligand excluded by PLIP MC3.4: 5 residues within 4Å: Chain A: Y.63, G.228, F.231, L.232 Ligands: MC3.3 Ligand excluded by PLIP MC3.5: 2 residues within 4Å: Chain B: F.235, S.236 Ligand excluded by PLIP MC3.6: 4 residues within 4Å: Chain B: T.260, T.263, V.264 Ligands: MC3.3 Ligand excluded by PLIP MC3.7: 2 residues within 4Å: Ligands: MC3.8, MC3.10 Ligand excluded by PLIP MC3.8: 5 residues within 4Å: Chain B: Y.63, G.228, F.231, L.232 Ligands: MC3.7 Ligand excluded by PLIP MC3.9: 2 residues within 4Å: Chain C: F.235, S.236 Ligand excluded by PLIP MC3.10: 4 residues within 4Å: Chain C: T.260, T.263, V.264 Ligands: MC3.7 Ligand excluded by PLIP MC3.11: 2 residues within 4Å: Ligands: MC3.12, MC3.14 Ligand excluded by PLIP MC3.12: 5 residues within 4Å: Chain C: Y.63, G.228, F.231, L.232 Ligands: MC3.11 Ligand excluded by PLIP MC3.13: 2 residues within 4Å: Chain D: F.235, S.236 Ligand excluded by PLIP MC3.14: 4 residues within 4Å: Chain D: T.260, T.263, V.264 Ligands: MC3.11 Ligand excluded by PLIP MC3.15: 2 residues within 4Å: Ligands: MC3.16, MC3.18 Ligand excluded by PLIP MC3.16: 5 residues within 4Å: Chain D: Y.63, G.228, F.231, L.232 Ligands: MC3.15 Ligand excluded by PLIP MC3.17: 2 residues within 4Å: Chain E: F.235, S.236 Ligand excluded by PLIP MC3.18: 4 residues within 4Å: Chain E: T.260, T.263, V.264 Ligands: MC3.15 Ligand excluded by PLIP MC3.19: 2 residues within 4Å: Ligands: MC3.20, MC3.22 Ligand excluded by PLIP MC3.20: 5 residues within 4Å: Chain E: Y.63, G.228, F.231, L.232 Ligands: MC3.19 Ligand excluded by PLIP MC3.21: 2 residues within 4Å: Chain F: F.235, S.236 Ligand excluded by PLIP MC3.22: 4 residues within 4Å: Chain F: T.260, T.263, V.264 Ligands: MC3.19 Ligand excluded by PLIP MC3.23: 2 residues within 4Å: Ligands: MC3.2, MC3.24 Ligand excluded by PLIP MC3.24: 5 residues within 4Å: Chain F: Y.63, G.228, F.231, L.232 Ligands: MC3.23 Ligand excluded by PLIP MC3.25: 2 residues within 4Å: Chain G: F.235, S.236 Ligand excluded by PLIP MC3.26: 4 residues within 4Å: Chain G: T.260, T.263, V.264 Ligands: MC3.47 Ligand excluded by PLIP MC3.27: 2 residues within 4Å: Ligands: MC3.28, MC3.30 Ligand excluded by PLIP MC3.28: 5 residues within 4Å: Chain G: Y.63, G.228, F.231, L.232 Ligands: MC3.27 Ligand excluded by PLIP MC3.29: 2 residues within 4Å: Chain H: F.235, S.236 Ligand excluded by PLIP MC3.30: 4 residues within 4Å: Chain H: T.260, T.263, V.264 Ligands: MC3.27 Ligand excluded by PLIP MC3.31: 2 residues within 4Å: Ligands: MC3.32, MC3.34 Ligand excluded by PLIP MC3.32: 5 residues within 4Å: Chain H: Y.63, G.228, F.231, L.232 Ligands: MC3.31 Ligand excluded by PLIP MC3.33: 2 residues within 4Å: Chain I: F.235, S.236 Ligand excluded by PLIP MC3.34: 4 residues within 4Å: Chain I: T.260, T.263, V.264 Ligands: MC3.31 Ligand excluded by PLIP MC3.35: 2 residues within 4Å: Ligands: MC3.36, MC3.38 Ligand excluded by PLIP MC3.36: 5 residues within 4Å: Chain I: Y.63, G.228, F.231, L.232 Ligands: MC3.35 Ligand excluded by PLIP MC3.37: 2 residues within 4Å: Chain J: F.235, S.236 Ligand excluded by PLIP MC3.38: 4 residues within 4Å: Chain J: T.260, T.263, V.264 Ligands: MC3.35 Ligand excluded by PLIP MC3.39: 2 residues within 4Å: Ligands: MC3.40, MC3.42 Ligand excluded by PLIP MC3.40: 5 residues within 4Å: Chain J: Y.63, G.228, F.231, L.232 Ligands: MC3.39 Ligand excluded by PLIP MC3.41: 2 residues within 4Å: Chain K: F.235, S.236 Ligand excluded by PLIP MC3.42: 4 residues within 4Å: Chain K: T.260, T.263, V.264 Ligands: MC3.39 Ligand excluded by PLIP MC3.43: 2 residues within 4Å: Ligands: MC3.44, MC3.46 Ligand excluded by PLIP MC3.44: 5 residues within 4Å: Chain K: Y.63, G.228, F.231, L.232 Ligands: MC3.43 Ligand excluded by PLIP MC3.45: 2 residues within 4Å: Chain L: F.235, S.236 Ligand excluded by PLIP MC3.46: 4 residues within 4Å: Chain L: T.260, T.263, V.264 Ligands: MC3.43 Ligand excluded by PLIP MC3.47: 2 residues within 4Å: Ligands: MC3.26, MC3.48 Ligand excluded by PLIP MC3.48: 5 residues within 4Å: Chain L: Y.63, G.228, F.231, L.232 Ligands: MC3.47 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S.N. et al., Cryo-EM structures of human Cx36/GJD2 neuronal gap junction channel. Nat Commun (2023)

Release Date

2023-03-22

Peptides

Gap junction delta-2 protein,Soluble cytochrome b562: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
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Gap junction delta-2 protein,Soluble cytochrome b562