SMTL ID : 7xld.1

Crystal structure of IsdH linker-NEAT3 bound to a nanobody (VHH)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: E.81, S.86, E.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.86 Water bridges: A:S.86

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain B: D.102, G.111, D.113 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.102, B:G.111, B:D.113, H2O.6, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valenciano-Bellido, S. et al., Targeting hemoglobin receptors IsdH and IsdB of Staphylococcus aureus with a single VHH antibody inhibits bacterial growth. J.Biol.Chem. (2023)

Release Date

2023-05-31

Peptides

Iron-regulated surface determinant protein H: A
Nanobody VHH6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Iron-regulated surface determinant protein H

Nanobody VHH6

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