SMTL ID : 7xli.1

Crystal structure of IsdB linker-NEAT2 bound to a nanobody (VHH)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: N.104, G.105 Ligand excluded by PLIP

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain B: D.102, G.111, D.113 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.102, B:G.111, B:D.113, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valenciano-Bellido, S. et al., Targeting hemoglobin receptors IsdH and IsdB of Staphylococcus aureus with a single VHH antibody inhibits bacterial growth. J.Biol.Chem. (2023)

Release Date

2023-05-31

Peptides

Iron-regulated surface determinant protein B: A
VHH6 nanobody: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Iron-regulated surface determinant protein B

VHH6 nanobody

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