SMTL ID : 7xm1.1

Cryo-EM structure of mTIP60-Ba (metal-ion induced TIP60 (K67E) complex with barium ions

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-60-mer

Ligands

60 x BA: BARIUM ION(Non-covalent)

BA.1: 4 residues within 4Å: Chain 6: D.77 Chain A: D.78, V.81, I.82 Ligand excluded by PLIP BA.2: 5 residues within 4Å: Chain B: D.78, V.81, I.82 Chain J: D.77, E.80 Ligand excluded by PLIP BA.3: 5 residues within 4Å: Chain B: D.77, E.80 Chain g: D.78, V.81, I.82 Ligand excluded by PLIP BA.4: 5 residues within 4Å: Chain C: D.78, V.81, I.82 Chain V: D.77, E.80 Ligand excluded by PLIP BA.5: 5 residues within 4Å: Chain C: D.77, E.80 Chain j: D.78, V.81, I.82 Ligand excluded by PLIP BA.6: 5 residues within 4Å: Chain D: D.78, V.81, I.82 Chain e: D.77, E.80 Ligand excluded by PLIP BA.7: 5 residues within 4Å: Chain 8: D.78, V.81, I.82 Chain D: D.77, E.80 Ligand excluded by PLIP BA.8: 4 residues within 4Å: Chain E: D.78, V.81, I.82 Chain m: D.77 Ligand excluded by PLIP BA.9: 5 residues within 4Å: Chain E: D.77, E.80 Chain G: D.78, V.81, I.82 Ligand excluded by PLIP BA.10: 5 residues within 4Å: Chain F: D.78, V.81, I.82 Chain W: D.77, E.80 Ligand excluded by PLIP BA.11: 5 residues within 4Å: Chain 7: D.78, V.81, I.82 Chain F: D.77, E.80 Ligand excluded by PLIP BA.12: 5 residues within 4Å: Chain G: D.77, E.80 Chain v: D.78, V.81, I.82 Ligand excluded by PLIP BA.13: 4 residues within 4Å: Chain H: D.77 Chain o: D.78, V.81, I.82 Ligand excluded by PLIP BA.14: 5 residues within 4Å: Chain I: D.77, E.80 Chain Y: D.78, V.81, I.82 Ligand excluded by PLIP BA.15: 5 residues within 4Å: Chain K: D.77, E.80 Chain c: D.78, V.81, I.82 Ligand excluded by PLIP BA.16: 5 residues within 4Å: Chain L: D.78, V.81, I.82 Chain T: D.77, E.80 Ligand excluded by PLIP BA.17: 5 residues within 4Å: Chain L: D.77, E.80 Chain l: D.78, V.81, I.82 Ligand excluded by PLIP BA.18: 4 residues within 4Å: Chain M: D.77 Chain e: D.78, V.81, I.82 Ligand excluded by PLIP BA.19: 5 residues within 4Å: Chain N: D.78, V.81, I.82 Chain j: D.77, E.80 Ligand excluded by PLIP BA.20: 5 residues within 4Å: Chain O: D.78, V.81, I.82 Chain h: D.77, E.80 Ligand excluded by PLIP BA.21: 5 residues within 4Å: Chain O: D.77, E.80 Chain Q: D.78, V.81, I.82 Ligand excluded by PLIP BA.22: 5 residues within 4Å: Chain S: D.78, V.81, I.82 Chain o: D.77, E.80 Ligand excluded by PLIP BA.23: 5 residues within 4Å: Chain A: D.77, E.80 Chain X: D.78, V.81, I.82 Ligand excluded by PLIP BA.24: 4 residues within 4Å: Chain Z: D.78, V.81, I.82 Chain g: D.77 Ligand excluded by PLIP BA.25: 5 residues within 4Å: Chain Z: D.77, E.80 Chain r: D.78, V.81, I.82 Ligand excluded by PLIP BA.26: 5 residues within 4Å: Chain 0: D.77, E.80 Chain R: D.78, V.81, I.82 Ligand excluded by PLIP BA.27: 5 residues within 4Å: Chain 0: D.78, V.81, I.82 Chain Y: D.77, E.80 Ligand excluded by PLIP BA.28: 5 residues within 4Å: Chain 1: D.77, E.80 Chain K: D.78, V.81, I.82 Ligand excluded by PLIP BA.29: 5 residues within 4Å: Chain 2: D.78, V.81, I.82 Chain P: D.77, E.80 Ligand excluded by PLIP BA.30: 4 residues within 4Å: Chain 2: D.77 Chain i: D.78, V.81, I.82 Ligand excluded by PLIP BA.31: 5 residues within 4Å: Chain 3: D.77, E.80 Chain V: D.78, V.81, I.82 Ligand excluded by PLIP BA.32: 5 residues within 4Å: Chain 3: D.78, V.81, I.82 Chain N: D.77, E.80 Ligand excluded by PLIP BA.33: 4 residues within 4Å: Chain 4: D.78, V.81, I.82 Chain l: D.77 Ligand excluded by PLIP BA.34: 5 residues within 4Å: Chain 4: D.77, E.80 Chain w: D.78, V.81, I.82 Ligand excluded by PLIP BA.35: 5 residues within 4Å: Chain 5: D.77, E.80 Chain H: D.78, V.81, I.82 Ligand excluded by PLIP BA.36: 4 residues within 4Å: Chain 5: D.78, V.81, I.82 Chain d: D.77 Ligand excluded by PLIP BA.37: 5 residues within 4Å: Chain 7: D.77, E.80 Chain n: D.78, V.81, I.82 Ligand excluded by PLIP BA.38: 5 residues within 4Å: Chain 8: D.77, E.80 Chain a: D.78, V.81, I.82 Ligand excluded by PLIP BA.39: 5 residues within 4Å: Chain 9: D.77, E.80 Chain m: D.78, V.81, I.82 Ligand excluded by PLIP BA.40: 5 residues within 4Å: Chain M: D.78, V.81, I.82 Chain a: D.77, E.80 Ligand excluded by PLIP BA.41: 4 residues within 4Å: Chain P: D.78, V.81, I.82 Chain b: D.77 Ligand excluded by PLIP BA.42: 4 residues within 4Å: Chain b: D.78, V.81, I.82 Chain k: D.77 Ligand excluded by PLIP BA.43: 5 residues within 4Å: Chain S: D.77, E.80 Chain d: D.78, V.81, I.82 Ligand excluded by PLIP BA.44: 5 residues within 4Å: Chain W: D.78, V.81, I.82 Chain f: D.77, E.80 Ligand excluded by PLIP BA.45: 5 residues within 4Å: Chain f: D.78, V.81, I.82 Chain n: D.77, E.80 Ligand excluded by PLIP BA.46: 5 residues within 4Å: Chain U: D.77, E.80 Chain h: D.78, V.81, I.82 Ligand excluded by PLIP BA.47: 5 residues within 4Å: Chain i: D.77, E.80 Chain k: D.78, V.81, I.82 Ligand excluded by PLIP BA.48: 5 residues within 4Å: Chain 1: D.78, V.81, I.82 Chain p: D.77, E.80 Ligand excluded by PLIP BA.49: 5 residues within 4Å: Chain p: D.78, V.81, I.82 Chain x: D.77, E.80 Ligand excluded by PLIP BA.50: 5 residues within 4Å: Chain U: D.78, V.81, I.82 Chain q: D.77, E.80 Ligand excluded by PLIP BA.51: 5 residues within 4Å: Chain Q: D.77, E.80 Chain q: D.78, V.81, I.82 Ligand excluded by PLIP BA.52: 5 residues within 4Å: Chain J: D.78, V.81, I.82 Chain r: D.77, E.80 Ligand excluded by PLIP BA.53: 4 residues within 4Å: Chain X: D.77 Chain s: D.78, V.81, I.82 Ligand excluded by PLIP BA.54: 5 residues within 4Å: Chain s: D.77, E.80 Chain u: D.78, V.81, I.82 Ligand excluded by PLIP BA.55: 5 residues within 4Å: Chain I: D.78, V.81, I.82 Chain t: D.77, E.80 Ligand excluded by PLIP BA.56: 4 residues within 4Å: Chain R: D.77 Chain t: D.78, V.81, I.82 Ligand excluded by PLIP BA.57: 5 residues within 4Å: Chain 6: D.78, V.81, I.82 Chain u: D.77, E.80 Ligand excluded by PLIP BA.58: 5 residues within 4Å: Chain 9: D.78, V.81, I.82 Chain v: D.77, E.80 Ligand excluded by PLIP BA.59: 5 residues within 4Å: Chain T: D.78, V.81, I.82 Chain w: D.77, E.80 Ligand excluded by PLIP BA.60: 4 residues within 4Å: Chain c: D.77 Chain x: D.78, V.81, I.82 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohara, N. et al., Reversible Assembly of an Artificial Protein Nanocage Using Alkaline Earth Metal Ions. J.Am.Chem.Soc. (2023)

Release Date

2023-01-04

Peptides

TIP60 K67E mutant: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
V

V
W

W
X

X
Y

Y
Z

Z
AA

0
BA

1
CA

2
DA

3
EA

4
FA

5
GA

6
HA

7
IA

8
JA

9
KA

a
LA

b
MA

c
NA

d
OA

e
PA

f
QA

g
RA

h
SA

i
TA

j
UA

k
VA

l
WA

m
XA

n
YA

o
ZA

p
AB

q
BB

r
CB

s
DB

t
EB

u
FB

v
GB

w
HB

x
IB

TIP60 K67E mutant