SMTL ID : 7xme.4 (3 other biounits)

Structure of Influenza A virus polymerase basic protein 2 (PB2) with an azazindole derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: D.138, N.139, M.141, R.162 Ligand excluded by PLIP

1 x GIH: (2~{S},3~{S})-3-[[5-dimethoxyphosphoryl-4-(5-fluoranyl-1~{H}-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-2-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid(Non-covalent)

GIH.2: 14 residues within 4Å: Chain A: S.4, F.6, S.7, F.8, R.15, S.20, H.40, E.44, F.46, K.59, F.87, Q.89, M.114, H.115 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.6, A:F.6, A:F.8, A:F.87, A:M.114 Hydrogen bonds: A:R.15, A:H.40, A:E.44 pi-Stacking: A:F.6, A:H.40, A:H.40, A:F.87 pi-Cation interactions: A:K.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Discovery of a novel azaindole derivatives targeting the influenza PB2 cap binding region. To Be Published

Release Date

2023-05-03

Peptides

Polymerase basic protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Polymerase basic protein 2

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