SMTL ID : 7xo6.1

SARS-CoV-2 Omicron BA.1 Variant RBD with mouse ACE2 Bound

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.53, T.55, E.57 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: E.402 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: S.420, D.543, N.546 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.420, A:S.420, A:S.420, A:N.546 NAG.4: 4 residues within 4Å: Chain B: D.336, F.339, N.340, V.364 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.339 Hydrogen bonds: B:D.336, B:N.340, B:V.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Y. et al., Structural and biochemical mechanism for increased infectivity and immune evasion of Omicron BA.2 variant compared to BA.1 and their possible mouse origins. Cell Res. (2022)

Release Date

2022-06-15

Peptides

Angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

Angiotensin-converting enzyme 2

Spike glycoprotein

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