SMTL ID : 7xqb.1

Structure of connexin43/Cx43/GJA1 gap junction intercellular channel in POPE/CHS nanodiscs at pH ~8.0

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

132 x C14: TETRADECANE(Non-covalent)(Non-functional Binders)

C14.1: 12 residues within 4Å: Chain A: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain C: T.204, I.208, F.212 Ligands: C14.2, C14.29 Ligand excluded by PLIP C14.2: 10 residues within 4Å: Chain A: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.1, C14.29, C14.30 Ligand excluded by PLIP C14.3: 15 residues within 4Å: Chain A: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain C: G.21, V.24, W.25 Ligands: C14.4, C14.32 Ligand excluded by PLIP C14.4: 7 residues within 4Å: Chain A: R.153, T.154, I.157, F.161 Chain C: W.25 Ligands: C14.3, C14.32 Ligand excluded by PLIP C14.5: 17 residues within 4Å: Chain A: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain C: I.31, F.32, L.35, T.39 Ligands: Y01.6, C14.34 Ligand excluded by PLIP C14.9: 11 residues within 4Å: Chain A: T.204, T.207, I.208, I.211, F.212, V.215 Chain G: F.84 Ligands: C14.10, C14.11, C14.92, C14.93 Ligand excluded by PLIP C14.10: 5 residues within 4Å: Chain A: I.211, V.215 Ligands: C14.9, C14.11, C14.93 Ligand excluded by PLIP C14.11: 10 residues within 4Å: Chain A: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.9, C14.10, C14.13 Ligand excluded by PLIP C14.12: 7 residues within 4Å: Chain A: G.21, W.25, V.219, L.223 Ligands: C14.13, C14.94, C14.95 Ligand excluded by PLIP C14.13: 7 residues within 4Å: Chain A: L.218, V.219, A.222, L.223, I.226 Ligands: C14.11, C14.12 Ligand excluded by PLIP C14.14: 8 residues within 4Å: Chain A: L.35, G.38, T.39, E.42 Chain G: F.30, I.34 Ligands: C14.96, Y01.97 Ligand excluded by PLIP C14.15: 12 residues within 4Å: Chain B: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain H: T.204, I.208, F.212 Ligands: C14.16, C14.99 Ligand excluded by PLIP C14.16: 10 residues within 4Å: Chain B: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.15, C14.99, C14.100 Ligand excluded by PLIP C14.17: 15 residues within 4Å: Chain B: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain H: G.21, V.24, W.25 Ligands: C14.18, C14.102 Ligand excluded by PLIP C14.18: 7 residues within 4Å: Chain B: R.153, T.154, I.157, F.161 Chain H: W.25 Ligands: C14.17, C14.102 Ligand excluded by PLIP C14.19: 17 residues within 4Å: Chain B: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain H: I.31, F.32, L.35, T.39 Ligands: Y01.20, C14.104 Ligand excluded by PLIP C14.23: 11 residues within 4Å: Chain B: T.204, T.207, I.208, I.211, F.212, V.215 Chain L: F.84 Ligands: C14.24, C14.25, C14.162, C14.163 Ligand excluded by PLIP C14.24: 5 residues within 4Å: Chain B: I.211, V.215 Ligands: C14.23, C14.25, C14.163 Ligand excluded by PLIP C14.25: 10 residues within 4Å: Chain B: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.23, C14.24, C14.27 Ligand excluded by PLIP C14.26: 7 residues within 4Å: Chain B: G.21, W.25, V.219, L.223 Ligands: C14.27, C14.164, C14.165 Ligand excluded by PLIP C14.27: 7 residues within 4Å: Chain B: L.218, V.219, A.222, L.223, I.226 Ligands: C14.25, C14.26 Ligand excluded by PLIP C14.28: 8 residues within 4Å: Chain B: L.35, G.38, T.39, E.42 Chain L: F.30, I.34 Ligands: C14.166, Y01.167 Ligand excluded by PLIP C14.29: 11 residues within 4Å: Chain A: F.84 Chain C: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.1, C14.2, C14.30, C14.31 Ligand excluded by PLIP C14.30: 5 residues within 4Å: Chain C: I.211, V.215 Ligands: C14.2, C14.29, C14.31 Ligand excluded by PLIP C14.31: 10 residues within 4Å: Chain C: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.29, C14.30, C14.33 Ligand excluded by PLIP C14.32: 7 residues within 4Å: Chain C: G.21, W.25, V.219, L.223 Ligands: C14.3, C14.4, C14.33 Ligand excluded by PLIP C14.33: 7 residues within 4Å: Chain C: L.218, V.219, A.222, L.223, I.226 Ligands: C14.31, C14.32 Ligand excluded by PLIP C14.34: 8 residues within 4Å: Chain A: F.30, I.34 Chain C: L.35, G.38, T.39, E.42 Ligands: C14.5, Y01.6 Ligand excluded by PLIP C14.35: 12 residues within 4Å: Chain C: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain D: T.204, I.208, F.212 Ligands: C14.36, C14.43 Ligand excluded by PLIP C14.36: 10 residues within 4Å: Chain C: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.35, C14.43, C14.44 Ligand excluded by PLIP C14.37: 15 residues within 4Å: Chain C: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain D: G.21, V.24, W.25 Ligands: C14.38, C14.46 Ligand excluded by PLIP C14.38: 7 residues within 4Å: Chain C: R.153, T.154, I.157, F.161 Chain D: W.25 Ligands: C14.37, C14.46 Ligand excluded by PLIP C14.39: 17 residues within 4Å: Chain C: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain D: I.31, F.32, L.35, T.39 Ligands: Y01.40, C14.48 Ligand excluded by PLIP C14.43: 11 residues within 4Å: Chain C: F.84 Chain D: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.35, C14.36, C14.44, C14.45 Ligand excluded by PLIP C14.44: 5 residues within 4Å: Chain D: I.211, V.215 Ligands: C14.36, C14.43, C14.45 Ligand excluded by PLIP C14.45: 10 residues within 4Å: Chain D: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.43, C14.44, C14.47 Ligand excluded by PLIP C14.46: 7 residues within 4Å: Chain D: G.21, W.25, V.219, L.223 Ligands: C14.37, C14.38, C14.47 Ligand excluded by PLIP C14.47: 7 residues within 4Å: Chain D: L.218, V.219, A.222, L.223, I.226 Ligands: C14.45, C14.46 Ligand excluded by PLIP C14.48: 8 residues within 4Å: Chain C: F.30, I.34 Chain D: L.35, G.38, T.39, E.42 Ligands: C14.39, Y01.40 Ligand excluded by PLIP C14.49: 12 residues within 4Å: Chain D: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain E: T.204, I.208, F.212 Ligands: C14.50, C14.56 Ligand excluded by PLIP C14.50: 10 residues within 4Å: Chain D: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.49, C14.56, C14.57 Ligand excluded by PLIP C14.51: 15 residues within 4Å: Chain D: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain E: G.21, V.24, W.25 Ligands: C14.52, C14.59 Ligand excluded by PLIP C14.52: 7 residues within 4Å: Chain D: R.153, T.154, I.157, F.161 Chain E: W.25 Ligands: C14.51, C14.59 Ligand excluded by PLIP C14.56: 11 residues within 4Å: Chain D: F.84 Chain E: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.49, C14.50, C14.57, C14.58 Ligand excluded by PLIP C14.57: 5 residues within 4Å: Chain E: I.211, V.215 Ligands: C14.50, C14.56, C14.58 Ligand excluded by PLIP C14.58: 10 residues within 4Å: Chain E: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.56, C14.57, C14.60 Ligand excluded by PLIP C14.59: 7 residues within 4Å: Chain E: G.21, W.25, V.219, L.223 Ligands: C14.51, C14.52, C14.60 Ligand excluded by PLIP C14.60: 8 residues within 4Å: Chain E: V.215, L.218, V.219, A.222, L.223, I.226 Ligands: C14.58, C14.59 Ligand excluded by PLIP C14.61: 8 residues within 4Å: Chain D: F.30, I.34 Chain E: L.35, G.38, T.39, E.42 Ligands: Y01.53, C14.62 Ligand excluded by PLIP C14.62: 17 residues within 4Å: Chain D: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain E: I.31, F.32, L.35, T.39 Ligands: Y01.53, C14.61 Ligand excluded by PLIP C14.63: 12 residues within 4Å: Chain E: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain F: T.204, I.208, F.212 Ligands: C14.64, C14.71 Ligand excluded by PLIP C14.64: 10 residues within 4Å: Chain E: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.63, C14.71, C14.72 Ligand excluded by PLIP C14.65: 15 residues within 4Å: Chain E: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain F: G.21, V.24, W.25 Ligands: C14.66, C14.74 Ligand excluded by PLIP C14.66: 7 residues within 4Å: Chain E: R.153, T.154, I.157, F.161 Chain F: W.25 Ligands: C14.65, C14.74 Ligand excluded by PLIP C14.67: 17 residues within 4Å: Chain E: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain F: I.31, F.32, L.35, T.39 Ligands: Y01.68, C14.76 Ligand excluded by PLIP C14.71: 11 residues within 4Å: Chain E: F.84 Chain F: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.63, C14.64, C14.72, C14.73 Ligand excluded by PLIP C14.72: 5 residues within 4Å: Chain F: I.211, V.215 Ligands: C14.64, C14.71, C14.73 Ligand excluded by PLIP C14.73: 10 residues within 4Å: Chain F: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.71, C14.72, C14.75 Ligand excluded by PLIP C14.74: 7 residues within 4Å: Chain F: G.21, W.25, V.219, L.223 Ligands: C14.65, C14.66, C14.75 Ligand excluded by PLIP C14.75: 8 residues within 4Å: Chain F: V.215, L.218, V.219, A.222, L.223, I.226 Ligands: C14.73, C14.74 Ligand excluded by PLIP C14.76: 8 residues within 4Å: Chain E: F.30, I.34 Chain F: L.35, G.38, T.39, E.42 Ligands: C14.67, Y01.68 Ligand excluded by PLIP C14.77: 12 residues within 4Å: Chain F: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain G: T.204, I.208, F.212 Ligands: C14.78, C14.86 Ligand excluded by PLIP C14.78: 10 residues within 4Å: Chain F: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.77, C14.86, C14.87 Ligand excluded by PLIP C14.79: 15 residues within 4Å: Chain F: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain G: G.21, V.24, W.25 Ligands: C14.80, C14.89 Ligand excluded by PLIP C14.80: 7 residues within 4Å: Chain F: R.153, T.154, I.157, F.161 Chain G: W.25 Ligands: C14.79, C14.89 Ligand excluded by PLIP C14.81: 17 residues within 4Å: Chain F: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain G: I.31, F.32, L.35, T.39 Ligands: Y01.82, C14.91 Ligand excluded by PLIP C14.86: 11 residues within 4Å: Chain F: F.84 Chain G: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.77, C14.78, C14.87, C14.88 Ligand excluded by PLIP C14.87: 5 residues within 4Å: Chain G: I.211, V.215 Ligands: C14.78, C14.86, C14.88 Ligand excluded by PLIP C14.88: 10 residues within 4Å: Chain G: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.86, C14.87, C14.90 Ligand excluded by PLIP C14.89: 7 residues within 4Å: Chain G: G.21, W.25, V.219, L.223 Ligands: C14.79, C14.80, C14.90 Ligand excluded by PLIP C14.90: 7 residues within 4Å: Chain G: L.218, V.219, A.222, L.223, I.226 Ligands: C14.88, C14.89 Ligand excluded by PLIP C14.91: 8 residues within 4Å: Chain F: F.30, I.34 Chain G: L.35, G.38, T.39, E.42 Ligands: C14.81, Y01.82 Ligand excluded by PLIP C14.92: 12 residues within 4Å: Chain A: T.204, I.208, F.212 Chain G: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Ligands: C14.9, C14.93 Ligand excluded by PLIP C14.93: 10 residues within 4Å: Chain G: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.9, C14.10, C14.92 Ligand excluded by PLIP C14.94: 15 residues within 4Å: Chain A: G.21, V.24, W.25 Chain G: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Ligands: C14.12, C14.95 Ligand excluded by PLIP C14.95: 7 residues within 4Å: Chain A: W.25 Chain G: R.153, T.154, I.157, F.161 Ligands: C14.12, C14.94 Ligand excluded by PLIP C14.96: 17 residues within 4Å: Chain A: I.31, F.32, L.35, T.39 Chain G: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Ligands: C14.14, Y01.97 Ligand excluded by PLIP C14.99: 11 residues within 4Å: Chain B: F.84 Chain H: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.15, C14.16, C14.100, C14.101 Ligand excluded by PLIP C14.100: 5 residues within 4Å: Chain H: I.211, V.215 Ligands: C14.16, C14.99, C14.101 Ligand excluded by PLIP C14.101: 10 residues within 4Å: Chain H: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.99, C14.100, C14.103 Ligand excluded by PLIP C14.102: 7 residues within 4Å: Chain H: G.21, W.25, V.219, L.223 Ligands: C14.17, C14.18, C14.103 Ligand excluded by PLIP C14.103: 8 residues within 4Å: Chain H: V.215, L.218, V.219, A.222, L.223, I.226 Ligands: C14.101, C14.102 Ligand excluded by PLIP C14.104: 8 residues within 4Å: Chain B: F.30, I.34 Chain H: L.35, G.38, T.39, E.42 Ligands: C14.19, Y01.20 Ligand excluded by PLIP C14.105: 12 residues within 4Å: Chain H: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain I: T.204, I.208, F.212 Ligands: C14.106, C14.113 Ligand excluded by PLIP C14.106: 10 residues within 4Å: Chain H: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.105, C14.113, C14.114 Ligand excluded by PLIP C14.107: 15 residues within 4Å: Chain H: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain I: G.21, V.24, W.25 Ligands: C14.108, C14.116 Ligand excluded by PLIP C14.108: 7 residues within 4Å: Chain H: R.153, T.154, I.157, F.161 Chain I: W.25 Ligands: C14.107, C14.116 Ligand excluded by PLIP C14.109: 17 residues within 4Å: Chain H: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain I: I.31, F.32, L.35, T.39 Ligands: Y01.110, C14.118 Ligand excluded by PLIP C14.113: 11 residues within 4Å: Chain H: F.84 Chain I: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.105, C14.106, C14.114, C14.115 Ligand excluded by PLIP C14.114: 5 residues within 4Å: Chain I: I.211, V.215 Ligands: C14.106, C14.113, C14.115 Ligand excluded by PLIP C14.115: 10 residues within 4Å: Chain I: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.113, C14.114, C14.117 Ligand excluded by PLIP C14.116: 7 residues within 4Å: Chain I: G.21, W.25, V.219, L.223 Ligands: C14.107, C14.108, C14.117 Ligand excluded by PLIP C14.117: 7 residues within 4Å: Chain I: L.218, V.219, A.222, L.223, I.226 Ligands: C14.115, C14.116 Ligand excluded by PLIP C14.118: 8 residues within 4Å: Chain H: F.30, I.34 Chain I: L.35, G.38, T.39, E.42 Ligands: C14.109, Y01.110 Ligand excluded by PLIP C14.119: 12 residues within 4Å: Chain I: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain J: T.204, I.208, F.212 Ligands: C14.120, C14.127 Ligand excluded by PLIP C14.120: 10 residues within 4Å: Chain I: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.119, C14.127, C14.128 Ligand excluded by PLIP C14.121: 15 residues within 4Å: Chain I: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain J: G.21, V.24, W.25 Ligands: C14.122, C14.130 Ligand excluded by PLIP C14.122: 7 residues within 4Å: Chain I: R.153, T.154, I.157, F.161 Chain J: W.25 Ligands: C14.121, C14.130 Ligand excluded by PLIP C14.123: 17 residues within 4Å: Chain I: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain J: I.31, F.32, L.35, T.39 Ligands: Y01.124, C14.132 Ligand excluded by PLIP C14.127: 11 residues within 4Å: Chain I: F.84 Chain J: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.119, C14.120, C14.128, C14.129 Ligand excluded by PLIP C14.128: 5 residues within 4Å: Chain J: I.211, V.215 Ligands: C14.120, C14.127, C14.129 Ligand excluded by PLIP C14.129: 10 residues within 4Å: Chain J: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.127, C14.128, C14.131 Ligand excluded by PLIP C14.130: 7 residues within 4Å: Chain J: G.21, W.25, V.219, L.223 Ligands: C14.121, C14.122, C14.131 Ligand excluded by PLIP C14.131: 8 residues within 4Å: Chain J: V.215, L.218, V.219, A.222, L.223, I.226 Ligands: C14.129, C14.130 Ligand excluded by PLIP C14.132: 8 residues within 4Å: Chain I: F.30, I.34 Chain J: L.35, G.38, T.39, E.42 Ligands: C14.123, Y01.124 Ligand excluded by PLIP C14.133: 12 residues within 4Å: Chain J: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain K: T.204, I.208, F.212 Ligands: C14.134, C14.141 Ligand excluded by PLIP C14.134: 10 residues within 4Å: Chain J: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.133, C14.141, C14.142 Ligand excluded by PLIP C14.135: 15 residues within 4Å: Chain J: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain K: G.21, V.24, W.25 Ligands: C14.136, C14.144 Ligand excluded by PLIP C14.136: 7 residues within 4Å: Chain J: R.153, T.154, I.157, F.161 Chain K: W.25 Ligands: C14.135, C14.144 Ligand excluded by PLIP C14.137: 17 residues within 4Å: Chain J: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain K: I.31, F.32, L.35, T.39 Ligands: Y01.138, C14.146 Ligand excluded by PLIP C14.141: 11 residues within 4Å: Chain J: F.84 Chain K: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.133, C14.134, C14.142, C14.143 Ligand excluded by PLIP C14.142: 5 residues within 4Å: Chain K: I.211, V.215 Ligands: C14.134, C14.141, C14.143 Ligand excluded by PLIP C14.143: 10 residues within 4Å: Chain K: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.141, C14.142, C14.145 Ligand excluded by PLIP C14.144: 7 residues within 4Å: Chain K: G.21, W.25, V.219, L.223 Ligands: C14.135, C14.136, C14.145 Ligand excluded by PLIP C14.145: 8 residues within 4Å: Chain K: V.215, L.218, V.219, A.222, L.223, I.226 Ligands: C14.143, C14.144 Ligand excluded by PLIP C14.146: 8 residues within 4Å: Chain J: F.30, I.34 Chain K: L.35, G.38, T.39, E.42 Ligands: C14.137, Y01.138 Ligand excluded by PLIP C14.147: 12 residues within 4Å: Chain K: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain L: T.204, I.208, F.212 Ligands: C14.148, C14.156 Ligand excluded by PLIP C14.148: 10 residues within 4Å: Chain K: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.147, C14.156, C14.157 Ligand excluded by PLIP C14.149: 15 residues within 4Å: Chain K: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain L: G.21, V.24, W.25 Ligands: C14.150, C14.159 Ligand excluded by PLIP C14.150: 7 residues within 4Å: Chain K: R.153, T.154, I.157, F.161 Chain L: W.25 Ligands: C14.149, C14.159 Ligand excluded by PLIP C14.151: 17 residues within 4Å: Chain K: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain L: I.31, F.32, L.35, T.39 Ligands: Y01.152, C14.161 Ligand excluded by PLIP C14.156: 11 residues within 4Å: Chain K: F.84 Chain L: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.147, C14.148, C14.157, C14.158 Ligand excluded by PLIP C14.157: 5 residues within 4Å: Chain L: I.211, V.215 Ligands: C14.148, C14.156, C14.158 Ligand excluded by PLIP C14.158: 10 residues within 4Å: Chain L: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.156, C14.157, C14.160 Ligand excluded by PLIP C14.159: 7 residues within 4Å: Chain L: G.21, W.25, V.219, L.223 Ligands: C14.149, C14.150, C14.160 Ligand excluded by PLIP C14.160: 7 residues within 4Å: Chain L: L.218, V.219, A.222, L.223, I.226 Ligands: C14.158, C14.159 Ligand excluded by PLIP C14.161: 8 residues within 4Å: Chain K: F.30, I.34 Chain L: L.35, G.38, T.39, E.42 Ligands: C14.151, Y01.152 Ligand excluded by PLIP C14.162: 12 residues within 4Å: Chain B: T.204, I.208, F.212 Chain L: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Ligands: C14.23, C14.163 Ligand excluded by PLIP C14.163: 10 residues within 4Å: Chain L: F.84, F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.23, C14.24, C14.162 Ligand excluded by PLIP C14.164: 15 residues within 4Å: Chain B: G.21, V.24, W.25 Chain L: V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Ligands: C14.26, C14.165 Ligand excluded by PLIP C14.165: 7 residues within 4Å: Chain B: W.25 Chain L: R.153, T.154, I.157, F.161 Ligands: C14.26, C14.164 Ligand excluded by PLIP C14.166: 17 residues within 4Å: Chain B: I.31, F.32, L.35, T.39 Chain L: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Ligands: C14.28, Y01.167 Ligand excluded by PLIP

24 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.6: 20 residues within 4Å: Chain A: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Chain C: I.31, L.35 Ligands: C14.5, Y01.7, PTY.8, C14.34, Y01.41 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.30, A:T.89 Hydrogen bonds: A:Q.15, A:S.18, A:Y.155 Salt bridges: A:K.162 Y01.7: 20 residues within 4Å: Chain A: L.11, V.14, Q.15, S.27, T.89, L.93 Chain G: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Ligands: Y01.6, Y01.41, PTY.84, PTY.85, Y01.97, Y01.98 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain A Hydrophobic interactions: G:L.7, G:L.93 Hydrogen bonds: A:Q.15 Y01.20: 20 residues within 4Å: Chain B: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Chain H: I.31, L.35 Ligands: C14.19, Y01.21, PTY.22, C14.104, Y01.111 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.30, B:T.89 Hydrogen bonds: B:Q.15, B:S.18, B:Y.155 Salt bridges: B:K.162 Y01.21: 20 residues within 4Å: Chain B: L.11, V.14, Q.15, S.27, T.89, L.93 Chain L: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Ligands: Y01.20, Y01.111, PTY.154, PTY.155, Y01.167, Y01.168 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain L Hydrogen bonds: B:Q.15 Hydrophobic interactions: L:L.7, L:L.93 Y01.40: 20 residues within 4Å: Chain C: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Chain D: I.31, L.35 Ligands: C14.39, Y01.41, PTY.42, C14.48, Y01.54 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:F.30, C:T.89 Hydrogen bonds: C:Q.15, C:S.18, C:Y.155 Salt bridges: C:K.162 Y01.41: 20 residues within 4Å: Chain A: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain C: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: Y01.6, Y01.7, PTY.8, Y01.40, Y01.54, PTY.85 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.7, A:L.93 Hydrogen bonds: C:Q.15 Y01.53: 20 residues within 4Å: Chain D: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Chain E: I.31, L.35 Ligands: Y01.54, PTY.55, C14.61, C14.62, Y01.69 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:F.30, D:T.89 Hydrogen bonds: D:Q.15, D:S.18, D:Y.155 Salt bridges: D:K.162 Y01.54: 20 residues within 4Å: Chain C: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain D: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.8, Y01.40, Y01.41, PTY.42, Y01.53, Y01.69 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:Q.15 Hydrophobic interactions: C:L.7, C:L.93 Y01.68: 20 residues within 4Å: Chain E: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Chain F: I.31, L.35 Ligands: C14.67, Y01.69, PTY.70, C14.76, Y01.83 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:F.30, E:T.89 Hydrogen bonds: E:Q.15, E:S.18, E:Y.155 Salt bridges: E:K.162 Y01.69: 20 residues within 4Å: Chain D: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain E: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.42, Y01.53, Y01.54, PTY.55, Y01.68, Y01.83 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain E Hydrophobic interactions: D:L.7, D:L.93 Hydrogen bonds: E:Q.15 Y01.82: 20 residues within 4Å: Chain F: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Chain G: I.31, L.35 Ligands: C14.81, Y01.83, PTY.84, C14.91, Y01.98 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:F.30, F:T.89 Hydrogen bonds: F:Q.15, F:S.18, F:Y.155 Salt bridges: F:K.162 Y01.83: 20 residues within 4Å: Chain E: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain F: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.55, Y01.68, Y01.69, PTY.70, Y01.82, Y01.98 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain E Hydrogen bonds: F:Q.15 Hydrophobic interactions: E:L.7, E:L.10, E:L.93 Y01.97: 20 residues within 4Å: Chain A: I.31, L.35 Chain G: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Ligands: Y01.7, C14.14, PTY.85, C14.96, Y01.98 6 PLIP interactions: 6 interactions with chain G Hydrophobic interactions: G:F.30, G:T.89 Hydrogen bonds: G:Q.15, G:S.18, G:Y.155 Salt bridges: G:K.162 Y01.98: 20 residues within 4Å: Chain F: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain G: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: Y01.7, PTY.70, Y01.82, Y01.83, PTY.84, Y01.97 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: F:L.7, F:L.10, F:L.93 Hydrogen bonds: G:Q.15 Y01.110: 20 residues within 4Å: Chain H: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Chain I: I.31, L.35 Ligands: C14.109, Y01.111, PTY.112, C14.118, Y01.125 6 PLIP interactions: 6 interactions with chain H Hydrophobic interactions: H:F.30, H:T.89 Hydrogen bonds: H:Q.15, H:S.18, H:Y.155 Salt bridges: H:K.162 Y01.111: 20 residues within 4Å: Chain B: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain H: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: Y01.20, Y01.21, PTY.22, Y01.110, Y01.125, PTY.155 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain H Hydrophobic interactions: B:L.7, B:L.10, B:L.93 Hydrogen bonds: H:Q.15 Y01.124: 20 residues within 4Å: Chain I: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Chain J: I.31, L.35 Ligands: C14.123, Y01.125, PTY.126, C14.132, Y01.139 6 PLIP interactions: 6 interactions with chain I Hydrophobic interactions: I:F.30, I:T.89 Hydrogen bonds: I:Q.15, I:S.18, I:Y.155 Salt bridges: I:K.162 Y01.125: 20 residues within 4Å: Chain H: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain I: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.22, Y01.110, Y01.111, PTY.112, Y01.124, Y01.139 3 PLIP interactions: 1 interactions with chain I, 2 interactions with chain H Hydrogen bonds: I:Q.15 Hydrophobic interactions: H:L.7, H:L.93 Y01.138: 20 residues within 4Å: Chain J: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Chain K: I.31, L.35 Ligands: C14.137, Y01.139, PTY.140, C14.146, Y01.153 6 PLIP interactions: 6 interactions with chain J Hydrophobic interactions: J:F.30, J:T.89 Hydrogen bonds: J:Q.15, J:S.18, J:Y.155 Salt bridges: J:K.162 Y01.139: 20 residues within 4Å: Chain I: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain J: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.112, Y01.124, Y01.125, PTY.126, Y01.138, Y01.153 3 PLIP interactions: 1 interactions with chain J, 2 interactions with chain I Hydrogen bonds: J:Q.15 Hydrophobic interactions: I:L.7, I:L.10 Y01.152: 20 residues within 4Å: Chain K: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Chain L: I.31, L.35 Ligands: C14.151, Y01.153, PTY.154, C14.161, Y01.168 6 PLIP interactions: 6 interactions with chain K Hydrophobic interactions: K:F.30, K:T.89 Hydrogen bonds: K:Q.15, K:S.18, K:Y.155 Salt bridges: K:K.162 Y01.153: 20 residues within 4Å: Chain J: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain K: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.126, Y01.138, Y01.139, PTY.140, Y01.152, Y01.168 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain K Hydrophobic interactions: J:L.7, J:L.10, J:L.93 Hydrogen bonds: K:Q.15 Y01.167: 20 residues within 4Å: Chain B: I.31, L.35 Chain L: Q.15, S.18, G.22, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, K.162 Ligands: Y01.21, C14.28, PTY.155, C14.166, Y01.168 6 PLIP interactions: 6 interactions with chain L Hydrophobic interactions: L:F.30, L:T.89 Hydrogen bonds: L:Q.15, L:S.18, L:Y.155 Salt bridges: L:K.162 Y01.168: 20 residues within 4Å: Chain K: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain L: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: Y01.21, PTY.140, Y01.152, Y01.153, PTY.154, Y01.167 3 PLIP interactions: 2 interactions with chain K, 1 interactions with chain L Hydrophobic interactions: K:L.7, K:L.93 Hydrogen bonds: L:Q.15

12 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.8: 17 residues within 4Å: Chain A: A.6, L.7, L.10, F.97, R.101, E.104 Chain C: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Ligands: Y01.6, Y01.41, Y01.54 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:A.6, A:F.97, C:I.31 Hydrogen bonds: A:E.104, C:S.5 Salt bridges: A:R.101 PTY.22: 16 residues within 4Å: Chain B: A.6, L.7, L.10, F.97, R.101 Chain H: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Ligands: Y01.20, Y01.111, Y01.125 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain H Hydrophobic interactions: B:A.6, B:F.97, H:I.31 Salt bridges: B:R.101 Hydrogen bonds: H:S.5 PTY.42: 16 residues within 4Å: Chain C: A.6, L.7, L.10, F.97, R.101 Chain D: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Ligands: Y01.40, Y01.54, Y01.69 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:A.6, C:F.97, D:I.31 Salt bridges: C:R.101 Hydrogen bonds: D:S.5 PTY.55: 16 residues within 4Å: Chain D: A.6, L.7, L.10, F.97, R.101 Chain E: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Ligands: Y01.53, Y01.69, Y01.83 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain E Hydrophobic interactions: D:A.6, D:F.97, E:I.31 Hydrogen bonds: D:E.104, E:S.5 Salt bridges: D:R.101 PTY.70: 16 residues within 4Å: Chain E: A.6, L.7, L.10, F.97, R.101 Chain F: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Ligands: Y01.68, Y01.83, Y01.98 6 PLIP interactions: 4 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: E:A.6, E:F.97, F:I.31 Hydrogen bonds: E:E.104, F:S.5 Salt bridges: E:R.101 PTY.84: 16 residues within 4Å: Chain F: A.6, L.7, L.10, F.97, R.101 Chain G: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Ligands: Y01.7, Y01.82, Y01.98 5 PLIP interactions: 2 interactions with chain G, 3 interactions with chain F Hydrophobic interactions: G:I.31, F:A.6, F:F.97 Hydrogen bonds: G:S.5 Salt bridges: F:R.101 PTY.85: 16 residues within 4Å: Chain A: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Chain G: A.6, L.7, L.10, F.97, R.101 Ligands: Y01.7, Y01.41, Y01.97 7 PLIP interactions: 5 interactions with chain G, 2 interactions with chain A Hydrophobic interactions: G:A.6, G:L.7, G:L.7, G:F.97, A:I.31 Salt bridges: G:R.101 Hydrogen bonds: A:S.5 PTY.112: 16 residues within 4Å: Chain H: A.6, L.7, L.10, F.97, R.101 Chain I: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Ligands: Y01.110, Y01.125, Y01.139 5 PLIP interactions: 3 interactions with chain H, 2 interactions with chain I Hydrophobic interactions: H:A.6, H:F.97, I:I.31 Salt bridges: H:R.101 Hydrogen bonds: I:S.5 PTY.126: 16 residues within 4Å: Chain I: A.6, L.7, L.10, F.97, R.101 Chain J: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Ligands: Y01.124, Y01.139, Y01.153 6 PLIP interactions: 4 interactions with chain I, 2 interactions with chain J Hydrophobic interactions: I:A.6, I:F.97, J:I.31 Hydrogen bonds: I:E.104, J:S.5 Salt bridges: I:R.101 PTY.140: 16 residues within 4Å: Chain J: A.6, L.7, L.10, F.97, R.101 Chain K: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Ligands: Y01.138, Y01.153, Y01.168 6 PLIP interactions: 4 interactions with chain J, 2 interactions with chain K Hydrophobic interactions: J:A.6, J:F.97, K:I.31 Hydrogen bonds: J:E.104, K:S.5 Salt bridges: J:R.101 PTY.154: 16 residues within 4Å: Chain K: A.6, L.7, L.10, F.97, R.101 Chain L: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Ligands: Y01.21, Y01.152, Y01.168 5 PLIP interactions: 3 interactions with chain K, 2 interactions with chain L Hydrophobic interactions: K:A.6, K:F.97, L:I.31 Salt bridges: K:R.101 Hydrogen bonds: L:S.5 PTY.155: 16 residues within 4Å: Chain B: W.4, S.5, L.7, G.8, K.9, L.11, D.12, I.31 Chain L: A.6, L.7, L.10, F.97, R.101 Ligands: Y01.21, Y01.111, Y01.167 6 PLIP interactions: 4 interactions with chain L, 2 interactions with chain B Hydrophobic interactions: L:A.6, L:L.7, L:F.97, B:I.31 Salt bridges: L:R.101 Hydrogen bonds: B:S.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.J. et al., Conformational changes in the human Cx43/GJA1 gap junction channel visualized using cryo-EM. Nat Commun (2023)

Release Date

2023-02-01

Peptides

Gap junction alpha-1 protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
G

C
B

D
C

E
D

F
E

G
F

H
H

I
I

J
J

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
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Gap junction alpha-1 protein

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