SMTL ID : 7xqf.1

Structure of C-terminal truncated connexin43/Cx43/GJA1 gap junction intercellular channel in POPE/CHS nanodiscs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

132 x C14: TETRADECANE(Non-covalent)(Non-functional Binders)

C14.1: 12 residues within 4Å: Chain A: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain B: T.204, I.208, F.212 Ligands: C14.2, C14.3 Ligand excluded by PLIP C14.2: 12 residues within 4Å: Chain A: F.84 Chain B: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.1, C14.3, C14.4, C14.5, C14.8 Ligand excluded by PLIP C14.3: 9 residues within 4Å: Chain A: F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.1, C14.2, C14.4 Ligand excluded by PLIP C14.4: 5 residues within 4Å: Chain B: I.211, V.215 Ligands: C14.2, C14.3, C14.5 Ligand excluded by PLIP C14.5: 9 residues within 4Å: Chain B: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.2, C14.4 Ligand excluded by PLIP C14.6: 14 residues within 4Å: Chain A: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain B: W.25 Ligands: C14.7, C14.8 Ligand excluded by PLIP C14.7: 8 residues within 4Å: Chain A: R.153, T.154, I.157, F.161, F.165 Chain B: W.25 Ligands: C14.6, C14.8 Ligand excluded by PLIP C14.8: 9 residues within 4Å: Chain B: G.21, W.25, V.215, V.219, L.223 Ligands: C14.2, C14.6, C14.7, C14.9 Ligand excluded by PLIP C14.9: 5 residues within 4Å: Chain B: L.218, V.219, A.222, I.226 Ligands: C14.8 Ligand excluded by PLIP C14.10: 11 residues within 4Å: Chain A: F.30, I.34 Chain B: L.35, G.38, T.39 Ligands: C14.11, PTY.12, Y01.14, C14.24, C14.25, C14.80 Ligand excluded by PLIP C14.11: 18 residues within 4Å: Chain A: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain B: I.31, F.32, L.35, T.39 Ligands: C14.10, Y01.14, C14.80 Ligand excluded by PLIP C14.15: 12 residues within 4Å: Chain B: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain C: T.204, I.208, F.212 Ligands: C14.16, C14.17 Ligand excluded by PLIP C14.16: 12 residues within 4Å: Chain B: F.84 Chain C: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.15, C14.17, C14.18, C14.19, C14.22 Ligand excluded by PLIP C14.17: 9 residues within 4Å: Chain B: F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.15, C14.16, C14.18 Ligand excluded by PLIP C14.18: 5 residues within 4Å: Chain C: I.211, V.215 Ligands: C14.16, C14.17, C14.19 Ligand excluded by PLIP C14.19: 9 residues within 4Å: Chain C: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.16, C14.18 Ligand excluded by PLIP C14.20: 14 residues within 4Å: Chain B: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain C: W.25 Ligands: C14.21, C14.22 Ligand excluded by PLIP C14.21: 8 residues within 4Å: Chain B: R.153, T.154, I.157, F.161, F.165 Chain C: W.25 Ligands: C14.20, C14.22 Ligand excluded by PLIP C14.22: 9 residues within 4Å: Chain C: G.21, W.25, V.215, V.219, L.223 Ligands: C14.16, C14.20, C14.21, C14.23 Ligand excluded by PLIP C14.23: 5 residues within 4Å: Chain C: L.218, V.219, A.222, I.226 Ligands: C14.22 Ligand excluded by PLIP C14.24: 11 residues within 4Å: Chain B: F.30, I.34 Chain C: L.35, G.38, T.39 Ligands: C14.10, C14.25, PTY.26, Y01.28, C14.38, C14.39 Ligand excluded by PLIP C14.25: 18 residues within 4Å: Chain B: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain C: I.31, F.32, L.35, T.39 Ligands: C14.10, C14.24, Y01.28 Ligand excluded by PLIP C14.29: 12 residues within 4Å: Chain C: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain D: T.204, I.208, F.212 Ligands: C14.30, C14.31 Ligand excluded by PLIP C14.30: 12 residues within 4Å: Chain C: F.84 Chain D: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.29, C14.31, C14.32, C14.33, C14.36 Ligand excluded by PLIP C14.31: 9 residues within 4Å: Chain C: F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.29, C14.30, C14.32 Ligand excluded by PLIP C14.32: 5 residues within 4Å: Chain D: I.211, V.215 Ligands: C14.30, C14.31, C14.33 Ligand excluded by PLIP C14.33: 9 residues within 4Å: Chain D: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.30, C14.32 Ligand excluded by PLIP C14.34: 14 residues within 4Å: Chain C: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain D: W.25 Ligands: C14.35, C14.36 Ligand excluded by PLIP C14.35: 8 residues within 4Å: Chain C: R.153, T.154, I.157, F.161, F.165 Chain D: W.25 Ligands: C14.34, C14.36 Ligand excluded by PLIP C14.36: 9 residues within 4Å: Chain D: G.21, W.25, V.215, V.219, L.223 Ligands: C14.30, C14.34, C14.35, C14.37 Ligand excluded by PLIP C14.37: 5 residues within 4Å: Chain D: L.218, V.219, A.222, I.226 Ligands: C14.36 Ligand excluded by PLIP C14.38: 11 residues within 4Å: Chain C: F.30, I.34 Chain D: L.35, G.38, T.39 Ligands: C14.24, C14.39, PTY.40, Y01.42, C14.52, C14.53 Ligand excluded by PLIP C14.39: 18 residues within 4Å: Chain C: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain D: I.31, F.32, L.35, T.39 Ligands: C14.24, C14.38, Y01.42 Ligand excluded by PLIP C14.43: 12 residues within 4Å: Chain D: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain E: T.204, I.208, F.212 Ligands: C14.44, C14.45 Ligand excluded by PLIP C14.44: 12 residues within 4Å: Chain D: F.84 Chain E: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.43, C14.45, C14.46, C14.47, C14.50 Ligand excluded by PLIP C14.45: 10 residues within 4Å: Chain D: F.165, A.168, F.169, I.172, Y.175, I.176 Chain E: F.212 Ligands: C14.43, C14.44, C14.46 Ligand excluded by PLIP C14.46: 5 residues within 4Å: Chain E: I.211, V.215 Ligands: C14.44, C14.45, C14.47 Ligand excluded by PLIP C14.47: 9 residues within 4Å: Chain E: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.44, C14.46 Ligand excluded by PLIP C14.48: 15 residues within 4Å: Chain D: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain E: V.24, W.25 Ligands: C14.49, C14.50 Ligand excluded by PLIP C14.49: 8 residues within 4Å: Chain D: R.153, T.154, I.157, F.161, F.165 Chain E: W.25 Ligands: C14.48, C14.50 Ligand excluded by PLIP C14.50: 11 residues within 4Å: Chain E: G.21, G.22, W.25, L.29, V.215, V.219, L.223 Ligands: C14.44, C14.48, C14.49, C14.51 Ligand excluded by PLIP C14.51: 6 residues within 4Å: Chain E: L.218, V.219, A.222, L.223, I.226 Ligands: C14.50 Ligand excluded by PLIP C14.52: 11 residues within 4Å: Chain D: F.30, I.34 Chain E: L.35, G.38, T.39 Ligands: C14.38, C14.53, PTY.54, Y01.56, C14.66, C14.67 Ligand excluded by PLIP C14.53: 18 residues within 4Å: Chain D: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain E: I.31, F.32, L.35, T.39 Ligands: C14.38, C14.52, Y01.56 Ligand excluded by PLIP C14.57: 12 residues within 4Å: Chain E: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain F: T.204, I.208, F.212 Ligands: C14.58, C14.59 Ligand excluded by PLIP C14.58: 12 residues within 4Å: Chain E: F.84 Chain F: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.57, C14.59, C14.60, C14.61, C14.64 Ligand excluded by PLIP C14.59: 10 residues within 4Å: Chain E: F.165, A.168, F.169, I.172, Y.175, I.176 Chain F: F.212 Ligands: C14.57, C14.58, C14.60 Ligand excluded by PLIP C14.60: 5 residues within 4Å: Chain F: I.211, V.215 Ligands: C14.58, C14.59, C14.61 Ligand excluded by PLIP C14.61: 9 residues within 4Å: Chain F: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.58, C14.60 Ligand excluded by PLIP C14.62: 15 residues within 4Å: Chain E: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain F: V.24, W.25 Ligands: C14.63, C14.64 Ligand excluded by PLIP C14.63: 8 residues within 4Å: Chain E: R.153, T.154, I.157, F.161, F.165 Chain F: W.25 Ligands: C14.62, C14.64 Ligand excluded by PLIP C14.64: 10 residues within 4Å: Chain F: G.21, W.25, L.29, V.215, V.219, L.223 Ligands: C14.58, C14.62, C14.63, C14.65 Ligand excluded by PLIP C14.65: 5 residues within 4Å: Chain F: L.218, V.219, A.222, I.226 Ligands: C14.64 Ligand excluded by PLIP C14.66: 11 residues within 4Å: Chain E: F.30, I.34 Chain F: L.35, G.38, T.39 Ligands: C14.52, C14.67, PTY.68, Y01.70, C14.80, C14.81 Ligand excluded by PLIP C14.67: 18 residues within 4Å: Chain E: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain F: I.31, F.32, L.35, T.39 Ligands: C14.52, C14.66, Y01.70 Ligand excluded by PLIP C14.71: 12 residues within 4Å: Chain A: T.204, I.208, F.212 Chain F: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Ligands: C14.72, C14.73 Ligand excluded by PLIP C14.72: 12 residues within 4Å: Chain A: T.204, T.207, I.208, I.211, F.212, V.215 Chain F: F.84 Ligands: C14.71, C14.73, C14.74, C14.75, C14.78 Ligand excluded by PLIP C14.73: 9 residues within 4Å: Chain F: F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.71, C14.72, C14.74 Ligand excluded by PLIP C14.74: 5 residues within 4Å: Chain A: I.211, V.215 Ligands: C14.72, C14.73, C14.75 Ligand excluded by PLIP C14.75: 9 residues within 4Å: Chain A: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.72, C14.74 Ligand excluded by PLIP C14.76: 14 residues within 4Å: Chain A: W.25 Chain F: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Ligands: C14.77, C14.78 Ligand excluded by PLIP C14.77: 8 residues within 4Å: Chain A: W.25 Chain F: R.153, T.154, I.157, F.161, F.165 Ligands: C14.76, C14.78 Ligand excluded by PLIP C14.78: 9 residues within 4Å: Chain A: G.21, W.25, V.215, V.219, L.223 Ligands: C14.72, C14.76, C14.77, C14.79 Ligand excluded by PLIP C14.79: 5 residues within 4Å: Chain A: L.218, V.219, A.222, I.226 Ligands: C14.78 Ligand excluded by PLIP C14.80: 11 residues within 4Å: Chain A: L.35, G.38, T.39 Chain F: F.30, I.34 Ligands: C14.10, C14.11, C14.66, C14.81, PTY.82, Y01.84 Ligand excluded by PLIP C14.81: 18 residues within 4Å: Chain A: I.31, F.32, L.35, T.39 Chain F: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Ligands: C14.66, C14.80, Y01.84 Ligand excluded by PLIP C14.85: 12 residues within 4Å: Chain G: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain H: T.204, I.208, F.212 Ligands: C14.86, C14.87 Ligand excluded by PLIP C14.86: 12 residues within 4Å: Chain G: F.84 Chain H: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.85, C14.87, C14.88, C14.89, C14.92 Ligand excluded by PLIP C14.87: 9 residues within 4Å: Chain G: F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.85, C14.86, C14.88 Ligand excluded by PLIP C14.88: 5 residues within 4Å: Chain H: I.211, V.215 Ligands: C14.86, C14.87, C14.89 Ligand excluded by PLIP C14.89: 9 residues within 4Å: Chain H: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.86, C14.88 Ligand excluded by PLIP C14.90: 14 residues within 4Å: Chain G: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain H: W.25 Ligands: C14.91, C14.92 Ligand excluded by PLIP C14.91: 8 residues within 4Å: Chain G: R.153, T.154, I.157, F.161, F.165 Chain H: W.25 Ligands: C14.90, C14.92 Ligand excluded by PLIP C14.92: 9 residues within 4Å: Chain H: G.21, W.25, V.215, V.219, L.223 Ligands: C14.86, C14.90, C14.91, C14.93 Ligand excluded by PLIP C14.93: 5 residues within 4Å: Chain H: L.218, V.219, A.222, I.226 Ligands: C14.92 Ligand excluded by PLIP C14.94: 12 residues within 4Å: Chain G: F.30, I.34 Chain H: I.34, L.35, G.38, T.39 Ligands: C14.95, PTY.96, Y01.98, C14.108, C14.109, C14.164 Ligand excluded by PLIP C14.95: 18 residues within 4Å: Chain G: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain H: I.31, F.32, L.35, T.39 Ligands: C14.94, Y01.98, C14.164 Ligand excluded by PLIP C14.99: 12 residues within 4Å: Chain H: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain I: T.204, I.208, F.212 Ligands: C14.100, C14.101 Ligand excluded by PLIP C14.100: 12 residues within 4Å: Chain H: F.84 Chain I: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.99, C14.101, C14.102, C14.103, C14.106 Ligand excluded by PLIP C14.101: 9 residues within 4Å: Chain H: F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.99, C14.100, C14.102 Ligand excluded by PLIP C14.102: 5 residues within 4Å: Chain I: I.211, V.215 Ligands: C14.100, C14.101, C14.103 Ligand excluded by PLIP C14.103: 9 residues within 4Å: Chain I: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.100, C14.102 Ligand excluded by PLIP C14.104: 14 residues within 4Å: Chain H: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain I: W.25 Ligands: C14.105, C14.106 Ligand excluded by PLIP C14.105: 8 residues within 4Å: Chain H: R.153, T.154, I.157, F.161, F.165 Chain I: W.25 Ligands: C14.104, C14.106 Ligand excluded by PLIP C14.106: 9 residues within 4Å: Chain I: G.21, W.25, V.215, V.219, L.223 Ligands: C14.100, C14.104, C14.105, C14.107 Ligand excluded by PLIP C14.107: 5 residues within 4Å: Chain I: L.218, V.219, A.222, I.226 Ligands: C14.106 Ligand excluded by PLIP C14.108: 11 residues within 4Å: Chain H: F.30, I.34 Chain I: L.35, G.38, T.39 Ligands: C14.94, C14.109, PTY.110, Y01.112, C14.122, C14.123 Ligand excluded by PLIP C14.109: 18 residues within 4Å: Chain H: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain I: I.31, F.32, L.35, T.39 Ligands: C14.94, C14.108, Y01.112 Ligand excluded by PLIP C14.113: 12 residues within 4Å: Chain I: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain J: T.204, I.208, F.212 Ligands: C14.114, C14.115 Ligand excluded by PLIP C14.114: 12 residues within 4Å: Chain I: F.84 Chain J: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.113, C14.115, C14.116, C14.117, C14.120 Ligand excluded by PLIP C14.115: 9 residues within 4Å: Chain I: F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.113, C14.114, C14.116 Ligand excluded by PLIP C14.116: 5 residues within 4Å: Chain J: I.211, V.215 Ligands: C14.114, C14.115, C14.117 Ligand excluded by PLIP C14.117: 9 residues within 4Å: Chain J: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.114, C14.116 Ligand excluded by PLIP C14.118: 14 residues within 4Å: Chain I: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain J: W.25 Ligands: C14.119, C14.120 Ligand excluded by PLIP C14.119: 8 residues within 4Å: Chain I: R.153, T.154, I.157, F.161, F.165 Chain J: W.25 Ligands: C14.118, C14.120 Ligand excluded by PLIP C14.120: 9 residues within 4Å: Chain J: G.21, W.25, V.215, V.219, L.223 Ligands: C14.114, C14.118, C14.119, C14.121 Ligand excluded by PLIP C14.121: 5 residues within 4Å: Chain J: L.218, V.219, A.222, I.226 Ligands: C14.120 Ligand excluded by PLIP C14.122: 11 residues within 4Å: Chain I: F.30, I.34 Chain J: L.35, G.38, T.39 Ligands: C14.108, C14.123, PTY.124, Y01.126, C14.136, C14.137 Ligand excluded by PLIP C14.123: 18 residues within 4Å: Chain I: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain J: I.31, F.32, L.35, T.39 Ligands: C14.108, C14.122, Y01.126 Ligand excluded by PLIP C14.127: 12 residues within 4Å: Chain J: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain K: T.204, I.208, F.212 Ligands: C14.128, C14.129 Ligand excluded by PLIP C14.128: 12 residues within 4Å: Chain J: F.84 Chain K: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.127, C14.129, C14.130, C14.131, C14.134 Ligand excluded by PLIP C14.129: 9 residues within 4Å: Chain J: F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.127, C14.128, C14.130 Ligand excluded by PLIP C14.130: 5 residues within 4Å: Chain K: I.211, V.215 Ligands: C14.128, C14.129, C14.131 Ligand excluded by PLIP C14.131: 9 residues within 4Å: Chain K: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.128, C14.130 Ligand excluded by PLIP C14.132: 15 residues within 4Å: Chain J: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain K: V.24, W.25 Ligands: C14.133, C14.134 Ligand excluded by PLIP C14.133: 8 residues within 4Å: Chain J: R.153, T.154, I.157, F.161, F.165 Chain K: W.25 Ligands: C14.132, C14.134 Ligand excluded by PLIP C14.134: 9 residues within 4Å: Chain K: G.21, W.25, V.215, V.219, L.223 Ligands: C14.128, C14.132, C14.133, C14.135 Ligand excluded by PLIP C14.135: 5 residues within 4Å: Chain K: L.218, V.219, A.222, I.226 Ligands: C14.134 Ligand excluded by PLIP C14.136: 11 residues within 4Å: Chain J: F.30, I.34 Chain K: L.35, G.38, T.39 Ligands: C14.122, C14.137, PTY.138, Y01.140, C14.150, C14.151 Ligand excluded by PLIP C14.137: 18 residues within 4Å: Chain J: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain K: I.31, F.32, L.35, T.39 Ligands: C14.122, C14.136, Y01.140 Ligand excluded by PLIP C14.141: 12 residues within 4Å: Chain K: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Chain L: T.204, I.208, F.212 Ligands: C14.142, C14.143 Ligand excluded by PLIP C14.142: 12 residues within 4Å: Chain K: F.84 Chain L: T.204, T.207, I.208, I.211, F.212, V.215 Ligands: C14.141, C14.143, C14.144, C14.145, C14.148 Ligand excluded by PLIP C14.143: 9 residues within 4Å: Chain K: F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.141, C14.142, C14.144 Ligand excluded by PLIP C14.144: 5 residues within 4Å: Chain L: I.211, V.215 Ligands: C14.142, C14.143, C14.145 Ligand excluded by PLIP C14.145: 9 residues within 4Å: Chain L: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.142, C14.144 Ligand excluded by PLIP C14.146: 14 residues within 4Å: Chain K: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Chain L: W.25 Ligands: C14.147, C14.148 Ligand excluded by PLIP C14.147: 8 residues within 4Å: Chain K: R.153, T.154, I.157, F.161, F.165 Chain L: W.25 Ligands: C14.146, C14.148 Ligand excluded by PLIP C14.148: 9 residues within 4Å: Chain L: G.21, W.25, V.215, V.219, L.223 Ligands: C14.142, C14.146, C14.147, C14.149 Ligand excluded by PLIP C14.149: 5 residues within 4Å: Chain L: L.218, V.219, A.222, I.226 Ligands: C14.148 Ligand excluded by PLIP C14.150: 11 residues within 4Å: Chain K: F.30, I.34 Chain L: L.35, G.38, T.39 Ligands: C14.136, C14.151, PTY.152, Y01.154, C14.164, C14.165 Ligand excluded by PLIP C14.151: 18 residues within 4Å: Chain K: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Chain L: I.31, F.32, L.35, T.39 Ligands: C14.136, C14.150, Y01.154 Ligand excluded by PLIP C14.155: 12 residues within 4Å: Chain G: T.204, I.208, F.212 Chain L: P.71, I.72, F.77, L.80, F.169, I.172, I.176 Ligands: C14.156, C14.157 Ligand excluded by PLIP C14.156: 12 residues within 4Å: Chain G: T.204, T.207, I.208, I.211, F.212, V.215 Chain L: F.84 Ligands: C14.155, C14.157, C14.158, C14.159, C14.162 Ligand excluded by PLIP C14.157: 9 residues within 4Å: Chain L: F.165, A.168, F.169, I.172, Y.175, I.176 Ligands: C14.155, C14.156, C14.158 Ligand excluded by PLIP C14.158: 5 residues within 4Å: Chain G: I.211, V.215 Ligands: C14.156, C14.157, C14.159 Ligand excluded by PLIP C14.159: 9 residues within 4Å: Chain G: F.179, S.180, T.207, I.211, L.214, V.215, L.218 Ligands: C14.156, C14.158 Ligand excluded by PLIP C14.160: 14 residues within 4Å: Chain G: W.25 Chain L: F.84, V.87, P.88, L.91, Y.92, H.95, T.154, I.157, S.158, F.161, F.165 Ligands: C14.161, C14.162 Ligand excluded by PLIP C14.161: 8 residues within 4Å: Chain G: W.25 Chain L: R.153, T.154, I.157, F.161, F.165 Ligands: C14.160, C14.162 Ligand excluded by PLIP C14.162: 9 residues within 4Å: Chain G: G.21, W.25, V.215, V.219, L.223 Ligands: C14.156, C14.160, C14.161, C14.163 Ligand excluded by PLIP C14.163: 5 residues within 4Å: Chain G: L.218, V.219, A.222, I.226 Ligands: C14.162 Ligand excluded by PLIP C14.164: 11 residues within 4Å: Chain G: L.35, G.38, T.39 Chain L: F.30, I.34 Ligands: C14.94, C14.95, C14.150, C14.165, PTY.166, Y01.168 Ligand excluded by PLIP C14.165: 18 residues within 4Å: Chain G: I.31, F.32, L.35, T.39 Chain L: F.30, I.34, L.37, G.38, E.42, V.79, I.82, I.83, S.86, V.87, L.90 Ligands: C14.150, C14.164, Y01.168 Ligand excluded by PLIP

12 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.12: 19 residues within 4Å: Chain A: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Chain F: A.6, L.7, L.10, F.97, R.101 Ligands: C14.10, Y01.13, Y01.14, Y01.27, Y01.84 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain F Hydrophobic interactions: A:L.7 Hydrogen bonds: A:S.5, A:S.5 Salt bridges: F:R.101 PTY.26: 19 residues within 4Å: Chain A: A.6, L.7, L.10, F.97, R.101 Chain B: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Ligands: Y01.14, C14.24, Y01.27, Y01.28, Y01.41 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.7 Hydrogen bonds: B:S.5, B:S.5 Salt bridges: A:R.101 PTY.40: 19 residues within 4Å: Chain B: A.6, L.7, L.10, F.97, R.101 Chain C: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Ligands: Y01.28, C14.38, Y01.41, Y01.42, Y01.55 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:L.7, B:F.97 Hydrogen bonds: C:S.5, C:S.5 Salt bridges: B:R.101 PTY.54: 19 residues within 4Å: Chain C: A.6, L.7, L.10, F.97, R.101 Chain D: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Ligands: Y01.42, C14.52, Y01.55, Y01.56, Y01.69 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:L.7, D:L.7 Salt bridges: C:R.101 Hydrogen bonds: D:S.5, D:S.5 PTY.68: 20 residues within 4Å: Chain D: A.6, L.7, L.10, F.97, R.101, E.104 Chain E: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Ligands: Y01.56, C14.66, Y01.69, Y01.70, Y01.83 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain E Hydrophobic interactions: D:F.97, E:L.7 Salt bridges: D:R.101 Hydrogen bonds: E:S.5, E:S.5 PTY.82: 19 residues within 4Å: Chain E: A.6, L.7, L.10, F.97, R.101 Chain F: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Ligands: Y01.13, Y01.70, C14.80, Y01.83, Y01.84 5 PLIP interactions: 2 interactions with chain E, 3 interactions with chain F Hydrophobic interactions: E:F.97, F:L.7 Salt bridges: E:R.101 Hydrogen bonds: F:S.5, F:S.5 PTY.96: 19 residues within 4Å: Chain G: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Chain L: A.6, L.7, L.10, F.97, R.101 Ligands: C14.94, Y01.97, Y01.98, Y01.111, Y01.168 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain L Hydrophobic interactions: G:L.7 Hydrogen bonds: G:S.5, G:S.5 Salt bridges: L:R.101 PTY.110: 19 residues within 4Å: Chain G: A.6, L.7, L.10, F.97, R.101 Chain H: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Ligands: Y01.98, C14.108, Y01.111, Y01.112, Y01.125 6 PLIP interactions: 3 interactions with chain G, 3 interactions with chain H Hydrophobic interactions: G:A.6, G:L.7, H:L.7 Salt bridges: G:R.101 Hydrogen bonds: H:S.5, H:S.5 PTY.124: 19 residues within 4Å: Chain H: A.6, L.7, L.10, F.97, R.101 Chain I: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Ligands: Y01.112, C14.122, Y01.125, Y01.126, Y01.139 5 PLIP interactions: 2 interactions with chain H, 3 interactions with chain I Hydrophobic interactions: H:L.7, I:L.7 Salt bridges: H:R.101 Hydrogen bonds: I:S.5, I:S.5 PTY.138: 19 residues within 4Å: Chain I: A.6, L.7, L.10, F.97, R.101 Chain J: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Ligands: Y01.126, C14.136, Y01.139, Y01.140, Y01.153 5 PLIP interactions: 3 interactions with chain J, 2 interactions with chain I Hydrophobic interactions: J:L.7, I:F.97 Hydrogen bonds: J:S.5, J:S.5 Salt bridges: I:R.101 PTY.152: 19 residues within 4Å: Chain J: A.6, L.7, L.10, F.97, R.101 Chain K: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Ligands: Y01.140, C14.150, Y01.153, Y01.154, Y01.167 5 PLIP interactions: 3 interactions with chain K, 2 interactions with chain J Hydrophobic interactions: K:L.7, J:F.97 Hydrogen bonds: K:S.5, K:S.5 Salt bridges: J:R.101 PTY.166: 19 residues within 4Å: Chain K: A.6, L.7, L.10, F.97, R.101 Chain L: W.4, S.5, L.7, G.8, K.9, L.11, D.12, F.30, I.31 Ligands: Y01.97, Y01.154, C14.164, Y01.167, Y01.168 4 PLIP interactions: 1 interactions with chain K, 3 interactions with chain L Salt bridges: K:R.101 Hydrophobic interactions: L:L.7 Hydrogen bonds: L:S.5, L:S.5

24 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.13: 19 residues within 4Å: Chain A: L.11, V.14, Q.15, S.27, T.89, L.93 Chain F: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Ligands: PTY.12, Y01.14, Y01.27, PTY.82, Y01.83, Y01.84 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain A Hydrophobic interactions: F:L.7, F:A.94 Hydrogen bonds: A:Q.15 Y01.14: 21 residues within 4Å: Chain A: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Chain B: I.31, L.35 Ligands: C14.10, C14.11, PTY.12, Y01.13, PTY.26, Y01.27 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.26, A:F.30, A:F.30, A:F.30, A:T.89 Hydrogen bonds: A:Q.15, A:S.18, A:S.18 Salt bridges: A:K.162 Y01.27: 19 residues within 4Å: Chain A: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Chain B: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.12, Y01.13, Y01.14, PTY.26, Y01.28, Y01.41 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Q.15 Hydrophobic interactions: A:L.7, A:L.10, A:L.11, A:A.94 Y01.28: 21 residues within 4Å: Chain B: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Chain C: I.31, L.35 Ligands: C14.24, C14.25, PTY.26, Y01.27, PTY.40, Y01.41 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.26, B:F.30, B:F.30, B:F.30, B:T.89 Hydrogen bonds: B:Q.15, B:S.18, B:S.18 Salt bridges: B:K.162 Y01.41: 19 residues within 4Å: Chain B: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Chain C: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.26, Y01.27, Y01.28, PTY.40, Y01.42, Y01.55 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:L.7, B:L.10, B:L.11, B:L.93, B:A.94, B:F.97, B:F.97, B:Y.98 Hydrogen bonds: C:Q.15 Y01.42: 21 residues within 4Å: Chain C: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Chain D: I.31, L.35 Ligands: C14.38, C14.39, PTY.40, Y01.41, PTY.54, Y01.55 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:L.26, C:F.30, C:F.30, C:F.30, C:T.89 Hydrogen bonds: C:Q.15, C:S.18, C:S.18 Salt bridges: C:K.162 Y01.55: 19 residues within 4Å: Chain C: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Chain D: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.40, Y01.41, Y01.42, PTY.54, Y01.56, Y01.69 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:L.7, C:L.11, C:L.93, C:A.94 Hydrogen bonds: D:Q.15 Y01.56: 21 residues within 4Å: Chain D: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Chain E: I.31, L.35 Ligands: C14.52, C14.53, PTY.54, Y01.55, PTY.68, Y01.69 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:L.26, D:F.30, D:F.30, D:F.30, D:T.89 Hydrogen bonds: D:Q.15, D:S.18, D:S.18 Salt bridges: D:K.162 Y01.69: 20 residues within 4Å: Chain D: L.7, L.10, L.11, V.14, L.93, A.94, F.97, Y.98 Chain E: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.54, Y01.55, Y01.56, PTY.68, Y01.70, Y01.83 9 PLIP interactions: 1 interactions with chain E, 8 interactions with chain D Hydrogen bonds: E:Q.15 Hydrophobic interactions: D:L.7, D:L.11, D:L.93, D:A.94, D:F.97, D:F.97, D:F.97, D:Y.98 Y01.70: 21 residues within 4Å: Chain E: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Chain F: I.31, L.35 Ligands: C14.66, C14.67, PTY.68, Y01.69, PTY.82, Y01.83 9 PLIP interactions: 9 interactions with chain E Hydrophobic interactions: E:L.26, E:F.30, E:F.30, E:F.30, E:T.89 Hydrogen bonds: E:Q.15, E:S.18, E:S.18 Salt bridges: E:K.162 Y01.83: 19 residues within 4Å: Chain E: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Chain F: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: Y01.13, PTY.68, Y01.69, Y01.70, PTY.82, Y01.84 7 PLIP interactions: 6 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:L.7, E:L.11, E:L.93, E:A.94, E:F.97, E:Y.98 Hydrogen bonds: F:Q.15 Y01.84: 21 residues within 4Å: Chain A: I.31, L.35 Chain F: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Ligands: PTY.12, Y01.13, C14.80, C14.81, PTY.82, Y01.83 9 PLIP interactions: 9 interactions with chain F Hydrophobic interactions: F:L.26, F:F.30, F:F.30, F:F.30, F:T.89 Hydrogen bonds: F:Q.15, F:S.18, F:S.18 Salt bridges: F:K.162 Y01.97: 19 residues within 4Å: Chain G: L.11, V.14, Q.15, S.27, T.89, L.93 Chain L: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Ligands: PTY.96, Y01.98, Y01.111, PTY.166, Y01.167, Y01.168 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain G Hydrophobic interactions: L:L.7, L:L.10 Hydrogen bonds: G:Q.15 Y01.98: 21 residues within 4Å: Chain G: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Chain H: I.31, L.35 Ligands: C14.94, C14.95, PTY.96, Y01.97, PTY.110, Y01.111 9 PLIP interactions: 9 interactions with chain G Hydrophobic interactions: G:L.26, G:F.30, G:F.30, G:F.30, G:T.89 Hydrogen bonds: G:Q.15, G:S.18, G:S.18 Salt bridges: G:K.162 Y01.111: 19 residues within 4Å: Chain G: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Chain H: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.96, Y01.97, Y01.98, PTY.110, Y01.112, Y01.125 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain H Hydrophobic interactions: G:L.7, G:L.10, G:L.11 Hydrogen bonds: H:Q.15 Y01.112: 21 residues within 4Å: Chain H: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Chain I: I.31, L.35 Ligands: C14.108, C14.109, PTY.110, Y01.111, PTY.124, Y01.125 9 PLIP interactions: 9 interactions with chain H Hydrophobic interactions: H:L.26, H:F.30, H:F.30, H:F.30, H:T.89 Hydrogen bonds: H:Q.15, H:S.18, H:S.18 Salt bridges: H:K.162 Y01.125: 19 residues within 4Å: Chain H: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Chain I: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.110, Y01.111, Y01.112, PTY.124, Y01.126, Y01.139 5 PLIP interactions: 1 interactions with chain I, 4 interactions with chain H Hydrogen bonds: I:Q.15 Hydrophobic interactions: H:L.7, H:L.11, H:L.93, H:A.94 Y01.126: 21 residues within 4Å: Chain I: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Chain J: I.31, L.35 Ligands: C14.122, C14.123, PTY.124, Y01.125, PTY.138, Y01.139 9 PLIP interactions: 9 interactions with chain I Hydrophobic interactions: I:L.26, I:F.30, I:F.30, I:F.30, I:T.89 Hydrogen bonds: I:Q.15, I:S.18, I:S.18 Salt bridges: I:K.162 Y01.139: 19 residues within 4Å: Chain I: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Chain J: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.124, Y01.125, Y01.126, PTY.138, Y01.140, Y01.153 6 PLIP interactions: 5 interactions with chain I, 1 interactions with chain J Hydrophobic interactions: I:L.7, I:A.94, I:F.97, I:F.97, I:Y.98 Hydrogen bonds: J:Q.15 Y01.140: 21 residues within 4Å: Chain J: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Chain K: I.31, L.35 Ligands: C14.136, C14.137, PTY.138, Y01.139, PTY.152, Y01.153 9 PLIP interactions: 9 interactions with chain J Hydrophobic interactions: J:L.26, J:F.30, J:F.30, J:F.30, J:T.89 Hydrogen bonds: J:Q.15, J:S.18, J:S.18 Salt bridges: J:K.162 Y01.153: 19 residues within 4Å: Chain J: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Chain K: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: PTY.138, Y01.139, Y01.140, PTY.152, Y01.154, Y01.167 7 PLIP interactions: 6 interactions with chain J, 1 interactions with chain K Hydrophobic interactions: J:L.7, J:L.93, J:A.94, J:F.97, J:F.97, J:Y.98 Hydrogen bonds: K:Q.15 Y01.154: 21 residues within 4Å: Chain K: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Chain L: I.31, L.35 Ligands: C14.150, C14.151, PTY.152, Y01.153, PTY.166, Y01.167 9 PLIP interactions: 9 interactions with chain K Hydrophobic interactions: K:L.26, K:F.30, K:F.30, K:F.30, K:T.89 Hydrogen bonds: K:Q.15, K:S.18, K:S.18 Salt bridges: K:K.162 Y01.167: 19 residues within 4Å: Chain K: L.7, L.10, L.11, L.93, A.94, F.97, Y.98 Chain L: L.11, V.14, Q.15, S.27, T.89, L.93 Ligands: Y01.97, PTY.152, Y01.153, Y01.154, PTY.166, Y01.168 3 PLIP interactions: 1 interactions with chain L, 2 interactions with chain K Hydrogen bonds: L:Q.15 Hydrophobic interactions: K:L.7, K:L.11 Y01.168: 21 residues within 4Å: Chain G: I.31, L.35 Chain L: Q.15, S.18, K.23, L.26, S.27, F.30, S.86, T.89, L.90, L.93, Y.155, I.159, K.162 Ligands: PTY.96, Y01.97, C14.164, C14.165, PTY.166, Y01.167 9 PLIP interactions: 9 interactions with chain L Hydrophobic interactions: L:L.26, L:F.30, L:F.30, L:F.30, L:T.89 Hydrogen bonds: L:Q.15, L:S.18, L:S.18 Salt bridges: L:K.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.J. et al., Conformational changes in the human Cx43/GJA1 gap junction channel visualized using cryo-EM. Nat Commun (2023)

Release Date

2023-02-22

Peptides

Gap junction alpha-1 protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
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Gap junction alpha-1 protein

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