SMTL ID : 7xqk.1

The Crystal Structure of CDK3 and CyclinE1 Complex from Biortus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.328, L.329, H.330 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.329, A:H.330 Water bridges: A:H.330, A:H.330 Salt bridges: A:H.330 SO4.3: 3 residues within 4Å: Chain A: K.284 Chain B: K.165, R.167 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.165 Salt bridges: B:R.167, A:K.284 Water bridges: A:K.284 SO4.4: 3 residues within 4Å: Chain B: H.275, R.277, G.278 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.278 Salt bridges: B:H.275 SO4.5: 2 residues within 4Å: Chain B: G.269, S.270 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.270 Water bridges: B:R.266, B:T.268 SO4.6: 4 residues within 4Å: Chain B: Q.68, P.69, K.70, R.301 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.70 Water bridges: B:R.301, B:R.301, B:R.301 Salt bridges: B:R.301 SO4.7: 1 residues within 4Å: Chain B: R.277 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.277 SO4.8: 3 residues within 4Å: Chain B: E.62, P.65, N.109 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.109 SO4.9: 4 residues within 4Å: Chain B: H.233, A.262, M.263, R.266 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.233 SO4.10: 3 residues within 4Å: Chain B: P.198, Q.199, Q.200 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.199, B:Q.200 Water bridges: B:Q.199, B:Q.199, B:I.201 SO4.11: 4 residues within 4Å: Chain B: I.74, L.75, W.78, Q.116 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.75 SO4.12: 3 residues within 4Å: Chain A: H.349 Chain B: I.46, N.49 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:H.349 Water bridges: B:I.46, B:N.49

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: K.261, E.279, V.292, F.308, L.362, A.372, D.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.261, A:E.279, A:D.373 GOL.14: 5 residues within 4Å: Chain B: L.114, L.117, E.152, T.155, M.159 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.152 Water bridges: B:E.152, B:E.152 GOL.15: 8 residues within 4Å: Chain A: S.281, L.282, E.285, H.349, R.350 Chain B: I.46, K.50, S.169 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:K.50, B:S.169, A:S.281, A:R.350 Water bridges: B:S.169, A:R.350

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.13: 2 residues within 4Å: Chain B: V.111, T.113 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gui, W. et al., The Crystal Structure of CDK3 and CyclinE1 Complex from Biortus. To Be Published

Release Date

2023-05-17

Peptides

Glutathione S-transferase class-mu 26 kDa isozyme,Cyclin-dependent kinase 3: A
G1/S-specific cyclin-E1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase class-mu 26 kDa isozyme,Cyclin-dependent kinase 3

G1/S-specific cyclin-E1

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