SMTL ID : 7xqm.1

InDel-mutant short chain Dehydrogenase bound to SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

homo-tetramer

Ligands

4 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 21 residues within 4Å: Chain A: G.13, G.15, I.16, D.34, L.35, R.36, V.53, D.54, L.55, E.56, N.81, A.82, A.83, I.84, V.104, V.131, A.132, S.133, Y.146, K.150, P.176 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:A.83 Hydrogen bonds: A:I.16, A:D.34, A:D.34, A:D.34, A:L.35, A:R.36, A:R.36, A:D.54, A:D.54, A:L.55, A:E.56, A:N.81, A:Y.146 Water bridges: A:K.150, A:K.150 Salt bridges: A:K.150 SAH.2: 21 residues within 4Å: Chain B: G.13, G.15, I.16, C.33, D.34, L.35, R.36, V.53, D.54, L.55, E.56, N.81, A.82, A.83, I.84, V.104, V.131, A.132, Y.146, K.150, P.176 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:G.15, B:D.34, B:D.34, B:D.34, B:L.35, B:R.36, B:R.36, B:D.54, B:L.55, B:E.56, B:N.81, B:A.83, B:Y.146, B:K.150 Salt bridges: B:K.150 SAH.3: 20 residues within 4Å: Chain C: G.13, G.15, I.16, C.33, D.34, L.35, R.36, V.53, D.54, L.55, E.56, N.81, A.82, A.83, I.84, V.104, V.131, A.132, Y.146, K.150 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:D.34, C:D.34, C:D.34, C:L.35, C:R.36, C:R.36, C:D.54, C:D.54, C:L.55, C:E.56, C:N.81, C:A.83, C:Y.146, C:K.150 Salt bridges: C:K.150 SAH.4: 20 residues within 4Å: Chain D: G.13, G.15, I.16, D.34, L.35, R.36, V.53, D.54, L.55, E.56, N.81, A.82, A.83, I.84, V.104, V.131, A.132, Y.146, K.150, T.181 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:D.34, D:D.34, D:D.34, D:L.35, D:R.36, D:R.36, D:D.54, D:L.55, D:E.56, D:N.81, D:A.83, D:Y.146 Salt bridges: D:K.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toledo-Patino, S. et al., Insertions and deletions mediated functional divergence of Rossmann fold enzymes. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-12-21

Peptides

Dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dehydrogenase