SMTL ID : 7xqw.1

Formate dehydrogenase (FDH) from Methylobacterium extorquens AM1 (MeFDH1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x W: TUNGSTEN ION(Non-covalent)

W.1: 3 residues within 4Å: Chain A: C.436 Ligands: MGD.2, MGD.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.436

2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)

MGD.2: 22 residues within 4Å: Chain A: K.331, I.469, G.470, A.471, N.472, V.475, N.476, D.499, P.500, R.501, Q.503, F.515, P.517, G.518, D.520, G.593, M.594, G.595, V.596, G.631 Ligands: W.1, MGD.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.472, A:N.476, A:M.498, A:D.499, A:Q.503, A:G.518, A:M.594 Salt bridges: A:D.520 MGD.3: 19 residues within 4Å: Chain A: K.407, Q.632, G.698, E.699, M.703, S.704, Q.724, D.725, L.726, F.727, T.729, A.741, S.742, A.743, F.744, K.747, D.774 Ligands: W.1, MGD.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.632, A:S.704, A:Q.724, A:L.726, A:K.747, A:K.747 Salt bridges: A:K.407, A:D.774

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Covalent)(Non-covalent)

FES.4: 10 residues within 4Å: Chain A: H.100, L.101, C.102, H.103, D.112, G.113, N.114, C.115, C.118, C.132 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.102, A:C.115, A:C.118, A:C.132 FES.10: 10 residues within 4Å: Chain B: C.113, S.115, C.118, C.146, V.147, G.148, L.149, C.150, A.155, P.259 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.113, B:C.118, B:C.146, B:C.150

4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.5: 14 residues within 4Å: Chain A: C.213, I.214, Q.215, C.216, N.217, L.218, C.219, V.243, A.265, C.266, P.267, T.268, A.270, L.271 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.213, A:C.216, A:C.219, A:C.266 SF4.6: 12 residues within 4Å: Chain A: M.206, C.223, N.229, I.232, M.251, C.256, V.257, A.258, C.259, G.260, E.261, C.262 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.223, A:C.256, A:C.259, A:C.262 SF4.7: 11 residues within 4Å: Chain A: C.295, Y.297, C.298, V.300, C.302, L.328, C.329, K.331, G.332, P.478, V.479 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.295, A:C.298, A:C.302, A:C.329 SF4.9: 13 residues within 4Å: Chain B: I.330, P.348, S.501, C.502, G.503, Q.504, C.505, C.508, R.509, I.541, C.542, L.544, G.545 5 PLIP interactions: 5 interactions with chain B, Metal complexes: B:S.501, B:C.502, B:C.505, B:C.508, B:C.542

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.8: 19 residues within 4Å: Chain B: G.226, L.227, G.228, A.230, K.237, N.253, D.255, E.256, G.257, I.330, G.332, E.333, E.334, I.367, N.368, N.369, T.372, G.543, L.544 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:I.330, B:E.333, B:E.333, B:L.544 Hydrogen bonds: B:G.228, B:N.253, B:E.256, B:G.257, B:G.332, B:E.334, B:N.368, B:N.369, B:N.369 Salt bridges: B:K.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeon, B.W. et al., Enzymatic conversion of CO2 in real flue gas to molar-scale formate. To Be Published

Release Date

2023-08-09

Peptides

Formate dehydrogenase: A
Tungsten-containing formate dehydrogenase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Formate dehydrogenase

Tungsten-containing formate dehydrogenase beta subunit

Related Entries With Identical Sequence