SMTL ID : 7xqz.1

Drimenyl diphosphate synthase D303A from Streptomyces showdoensis in complex with 2-fluorofarnesyl diphosphate (2F-FPP) and Mg2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FPF: (2Z,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate(Non-covalent)

FPF.1: 25 residues within 4Å: Chain A: R.123, K.124, Q.154, W.156, N.199, F.239, I.240, M.243, F.246, F.284, D.292, A.294, D.295, T.334, F.335, M.345, W.384, Q.488, A.489, G.490, P.491, R.492, Y.496 Ligands: MG.2, MG.3 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.156, A:F.239, A:F.239, A:I.240, A:I.240, A:F.284, A:F.284, A:F.284, A:A.294, A:T.334, A:W.384, A:W.384, A:W.384 Hydrogen bonds: A:Q.154, A:R.492 Salt bridges: A:R.123, A:K.124, A:R.492 Halogen bonds: A:A.489

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: M.127, L.157, E.160, P.491 Ligands: FPF.1, MG.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.160 MG.3: 6 residues within 4Å: Chain A: W.156, E.160, N.199, F.239 Ligands: FPF.1, MG.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pan, X. et al., Discovery, Structure, and Mechanism of a Class II Sesquiterpene Cyclase. J.Am.Chem.Soc. (2022)

Release Date

2023-03-15

Peptides

SQHop_cyclase_C domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SQHop_cyclase_C domain-containing protein

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