- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x NI: NICKEL (II) ION(Non-covalent)
- 48 x FE: FE (III) ION(Non-covalent)
FE.3: 3 residues within 4Å:- Chain A: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.24, A:E.59, A:H.62, H2O.1, H2O.1
FE.4: 4 residues within 4Å:- Chain A: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.137, A:S.141, H2O.1, H2O.1, H2O.1
FE.7: 3 residues within 4Å:- Chain B: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.24, B:E.59, B:H.62, H2O.4, H2O.5
FE.8: 4 residues within 4Å:- Chain B: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.137, B:S.141, H2O.4, H2O.4, H2O.5
FE.11: 3 residues within 4Å:- Chain C: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.24, C:E.59, C:H.62, H2O.8, H2O.9
FE.12: 4 residues within 4Å:- Chain C: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:E.137, C:S.141, H2O.8, H2O.8, H2O.8
FE.15: 3 residues within 4Å:- Chain D: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.24, D:E.59, D:H.62, H2O.12, H2O.12
FE.16: 4 residues within 4Å:- Chain D: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:E.137, D:S.141, H2O.11, H2O.12, H2O.12
FE.19: 3 residues within 4Å:- Chain E: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:E.24, E:E.59, E:H.62, H2O.15, H2O.16
FE.20: 4 residues within 4Å:- Chain E: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain E, 3 Ligand-Water interactions- Metal complexes: E:E.137, E:S.141, H2O.15, H2O.15, H2O.16
FE.23: 3 residues within 4Å:- Chain F: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:E.24, F:E.59, F:H.62, H2O.19, H2O.20
FE.24: 4 residues within 4Å:- Chain F: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:E.137, F:S.141, H2O.19, H2O.19, H2O.19
FE.27: 3 residues within 4Å:- Chain G: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain G, 2 Ligand-Water interactions- Metal complexes: G:E.24, G:E.59, G:H.62, H2O.23, H2O.23
FE.28: 4 residues within 4Å:- Chain G: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain G, 3 Ligand-Water interactions- Metal complexes: G:E.137, G:S.141, H2O.22, H2O.23, H2O.23
FE.31: 3 residues within 4Å:- Chain H: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain H, 2 Ligand-Water interactions- Metal complexes: H:E.24, H:E.59, H:H.62, H2O.26, H2O.27
FE.32: 4 residues within 4Å:- Chain H: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain H, 3 Ligand-Water interactions- Metal complexes: H:E.137, H:S.141, H2O.26, H2O.26, H2O.26
FE.35: 3 residues within 4Å:- Chain I: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain I, 2 Ligand-Water interactions- Metal complexes: I:E.24, I:E.59, I:H.62, H2O.30, H2O.31
FE.36: 4 residues within 4Å:- Chain I: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain I, 3 Ligand-Water interactions- Metal complexes: I:E.137, I:S.141, H2O.30, H2O.30, H2O.30
FE.39: 3 residues within 4Å:- Chain J: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain J, 2 Ligand-Water interactions- Metal complexes: J:E.24, J:E.59, J:H.62, H2O.34, H2O.34
FE.40: 4 residues within 4Å:- Chain J: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain J, 3 Ligand-Water interactions- Metal complexes: J:E.137, J:S.141, H2O.33, H2O.34, H2O.34
FE.43: 3 residues within 4Å:- Chain K: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain K, 2 Ligand-Water interactions- Metal complexes: K:E.24, K:E.59, K:H.62, H2O.37, H2O.38
FE.44: 4 residues within 4Å:- Chain K: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain K, 3 Ligand-Water interactions- Metal complexes: K:E.137, K:S.141, H2O.37, H2O.37, H2O.37
FE.47: 3 residues within 4Å:- Chain L: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain L, 2 Ligand-Water interactions- Metal complexes: L:E.24, L:E.59, L:H.62, H2O.41, H2O.42
FE.48: 4 residues within 4Å:- Chain L: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain L, 3 Ligand-Water interactions- Metal complexes: L:E.137, L:S.141, H2O.41, H2O.41, H2O.41
FE.51: 3 residues within 4Å:- Chain M: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain M, 2 Ligand-Water interactions- Metal complexes: M:E.24, M:E.59, M:H.62, H2O.44, H2O.45
FE.52: 4 residues within 4Å:- Chain M: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain M, 3 Ligand-Water interactions- Metal complexes: M:E.137, M:S.141, H2O.44, H2O.45, H2O.45
FE.55: 3 residues within 4Å:- Chain N: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain N, 2 Ligand-Water interactions- Metal complexes: N:E.24, N:E.59, N:H.62, H2O.48, H2O.49
FE.56: 4 residues within 4Å:- Chain N: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain N, 3 Ligand-Water interactions- Metal complexes: N:E.137, N:S.141, H2O.48, H2O.48, H2O.48
FE.59: 3 residues within 4Å:- Chain O: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain O, 2 Ligand-Water interactions- Metal complexes: O:E.24, O:E.59, O:H.62, H2O.52, H2O.53
FE.60: 4 residues within 4Å:- Chain O: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain O, 3 Ligand-Water interactions- Metal complexes: O:E.137, O:S.141, H2O.52, H2O.52, H2O.52
FE.63: 3 residues within 4Å:- Chain P: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain P, 2 Ligand-Water interactions- Metal complexes: P:E.24, P:E.59, P:H.62, H2O.55, H2O.56
FE.64: 4 residues within 4Å:- Chain P: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain P, 3 Ligand-Water interactions- Metal complexes: P:E.137, P:S.141, H2O.55, H2O.56, H2O.56
FE.67: 3 residues within 4Å:- Chain Q: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain Q, 2 Ligand-Water interactions- Metal complexes: Q:E.24, Q:E.59, Q:H.62, H2O.59, H2O.60
FE.68: 4 residues within 4Å:- Chain Q: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain Q, 3 Ligand-Water interactions- Metal complexes: Q:E.137, Q:S.141, H2O.59, H2O.59, H2O.59
FE.71: 3 residues within 4Å:- Chain R: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain R, 2 Ligand-Water interactions- Metal complexes: R:E.24, R:E.59, R:H.62, H2O.63, H2O.64
FE.72: 4 residues within 4Å:- Chain R: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain R, 3 Ligand-Water interactions- Metal complexes: R:E.137, R:S.141, H2O.63, H2O.63, H2O.63
FE.75: 3 residues within 4Å:- Chain S: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain S, 2 Ligand-Water interactions- Metal complexes: S:E.24, S:E.59, S:H.62, H2O.66, H2O.67
FE.76: 4 residues within 4Å:- Chain S: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain S, 3 Ligand-Water interactions- Metal complexes: S:E.137, S:S.141, H2O.66, H2O.67, H2O.67
FE.79: 3 residues within 4Å:- Chain T: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain T, 2 Ligand-Water interactions- Metal complexes: T:E.24, T:E.59, T:H.62, H2O.70, H2O.71
FE.80: 4 residues within 4Å:- Chain T: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain T, 3 Ligand-Water interactions- Metal complexes: T:E.137, T:S.141, H2O.70, H2O.70, H2O.70
FE.83: 3 residues within 4Å:- Chain U: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain U, 2 Ligand-Water interactions- Metal complexes: U:E.24, U:E.59, U:H.62, H2O.74, H2O.74
FE.84: 4 residues within 4Å:- Chain U: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain U, 3 Ligand-Water interactions- Metal complexes: U:E.137, U:S.141, H2O.74, H2O.74, H2O.74
FE.87: 3 residues within 4Å:- Chain V: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain V, 2 Ligand-Water interactions- Metal complexes: V:E.24, V:E.59, V:H.62, H2O.77, H2O.78
FE.88: 4 residues within 4Å:- Chain V: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain V, 3 Ligand-Water interactions- Metal complexes: V:E.137, V:S.141, H2O.77, H2O.77, H2O.78
FE.91: 3 residues within 4Å:- Chain W: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain W, 2 Ligand-Water interactions- Metal complexes: W:E.24, W:E.59, W:H.62, H2O.81, H2O.82
FE.92: 4 residues within 4Å:- Chain W: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain W, 3 Ligand-Water interactions- Metal complexes: W:E.137, W:S.141, H2O.81, H2O.81, H2O.81
FE.95: 3 residues within 4Å:- Chain X: E.24, E.59, H.62
5 PLIP interactions:3 interactions with chain X, 2 Ligand-Water interactions- Metal complexes: X:E.24, X:E.59, X:H.62, H2O.85, H2O.85
FE.96: 4 residues within 4Å:- Chain X: E.58, E.104, E.137, S.141
5 PLIP interactions:2 interactions with chain X, 3 Ligand-Water interactions- Metal complexes: X:E.137, X:S.141, H2O.85, H2O.85, H2O.85
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, G.H. et al., ferritin nanocage assembly with nickel ion. To Be Published
- Release Date
- 2023-05-17
- Peptides
- Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x NI: NICKEL (II) ION(Non-covalent)
- 48 x FE: FE (III) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, G.H. et al., ferritin nanocage assembly with nickel ion. To Be Published
- Release Date
- 2023-05-17
- Peptides
- Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A