- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 16 x C14: TETRADECANE(Non-covalent)
- 10 x D12: DODECANE(Non-covalent)
D12.9: 3 residues within 4Å:- Chain A: T.1050, I.1053, V.1057
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:T.1050, A:I.1053, A:V.1057
D12.10: 4 residues within 4Å:- Chain A: H.706, F.707, F.708
- Ligands: C14.8
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:H.706, A:F.707, A:F.708
D12.11: 1 residues within 4Å:- Chain A: V.1100
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.1100
D12.12: 4 residues within 4Å:- Chain A: I.880, F.881, I.884, V.888
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:I.880, A:F.881, A:I.884, A:V.888
D12.20: 6 residues within 4Å:- Chain A: I.804, S.808, M.876, M.879, S.883, I.953
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.804, A:I.953
D12.32: 3 residues within 4Å:- Chain B: T.1050, I.1053, V.1057
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:T.1050, B:I.1053, B:V.1057
D12.33: 4 residues within 4Å:- Chain B: H.706, F.707, F.708
- Ligands: C14.31
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:H.706, B:F.707, B:F.708
D12.34: 1 residues within 4Å:- Chain B: V.1100
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:V.1100
D12.35: 3 residues within 4Å:- Chain B: I.880, F.881, I.884
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.880, B:F.881, B:I.884
D12.43: 6 residues within 4Å:- Chain B: I.804, S.808, M.876, M.879, S.883, I.953
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.804, B:I.953
- 14 x HP6: HEPTANE(Non-functional Binders)(Non-covalent)
HP6.13: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)HP6.14: 1 residues within 4Å:- Chain A: K.863
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:K.863
HP6.15: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)HP6.16: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)HP6.17: 1 residues within 4Å:- Chain A: C.773
No protein-ligand interaction detected (PLIP)HP6.18: 4 residues within 4Å:- Chain A: N.667, F.668, L.790, I.1118
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:N.667, A:F.668
HP6.19: 3 residues within 4Å:- Chain A: N.784, G.786, R.787
No protein-ligand interaction detected (PLIP)HP6.36: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)HP6.37: 2 residues within 4Å:- Chain B: E.862, K.863
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:K.863
HP6.38: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)HP6.39: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)HP6.40: 1 residues within 4Å:- Chain B: C.773
No protein-ligand interaction detected (PLIP)HP6.41: 3 residues within 4Å:- Chain B: N.667, F.668, I.1118
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:N.667, B:F.668
HP6.42: 4 residues within 4Å:- Chain B: N.784, G.786, R.787, L.790
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.790
- 2 x BGI: (2S)-{[(2S,3S,4S)-2-amino-4-hydroxy-4-(5-hydroxypyridin-2-yl)-3-methylbutanoyl]amino}[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]acetic acid (non-preferred name)(Non-covalent)
BGI.22: 20 residues within 4Å:- Chain A: T.453, M.454, Y.455, E.457, D.500, N.575, K.577, K.578, D.602, A.603, T.605, I.631, Y.654, P.675, A.677, T.744, D.745, Q.756, R.759, W.760
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:Y.455, A:I.631, A:W.760, A:W.760
- Hydrogen bonds: A:T.453, A:T.453, A:D.500, A:D.500, A:S.581, A:D.602, A:D.602, A:A.603, A:T.744, A:T.744
- Salt bridges: A:K.578, A:R.759
BGI.44: 20 residues within 4Å:- Chain B: T.453, M.454, Y.455, E.457, D.500, N.575, K.577, K.578, S.581, D.602, A.603, T.605, Y.654, P.675, A.677, T.744, D.745, Q.756, R.759, W.760
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:Y.455, B:W.760
- Hydrogen bonds: B:T.453, B:T.453, B:D.500, B:D.500, B:N.575, B:S.581, B:D.602, B:D.602, B:A.603, B:T.605, B:T.744
- Salt bridges: B:K.578, B:R.759
- 2 x 0V9: (19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate(Non-covalent)
0V9.23: 22 residues within 4Å:- Chain A: L.809, F.813, R.817, L.839, W.840, G.843, I.844, T.846, L.847, F.850, V.1048, V.1055, L.1059, T.1061, I.1087, P.1088
- Chain B: V.1048, F.1052, T.1061, G.1062, D.1066
- Ligands: 0V9.24
15 PLIP interactions:11 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:L.809, A:F.813, A:L.839, A:W.840, A:T.846, A:L.847, A:F.850, A:F.850, A:V.1048, A:V.1055, B:V.1048, B:F.1052, B:F.1052, B:F.1052
- Salt bridges: A:R.817
0V9.24: 22 residues within 4Å:- Chain A: I.1049, F.1052, T.1061, G.1062, D.1066
- Chain B: L.809, F.813, R.817, L.839, W.840, G.843, I.844, T.846, L.847, F.850, V.1048, V.1055, L.1059, T.1061, I.1087, P.1088
- Ligands: 0V9.23
15 PLIP interactions:11 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:L.809, B:F.813, B:L.839, B:W.840, B:T.846, B:L.847, B:F.850, B:F.850, B:V.1048, B:V.1055, A:I.1049, A:F.1052, A:F.1052, A:F.1052
- Salt bridges: B:R.817
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, Y.N. et al., structure of a membrane-integrated glycosyltransferase with inhibitor. To Be Published
- Release Date
- 2023-05-17
- Peptides
- Chitin synthase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 16 x C14: TETRADECANE(Non-covalent)
- 10 x D12: DODECANE(Non-covalent)
- 14 x HP6: HEPTANE(Non-functional Binders)(Non-covalent)
- 2 x BGI: (2S)-{[(2S,3S,4S)-2-amino-4-hydroxy-4-(5-hydroxypyridin-2-yl)-3-methylbutanoyl]amino}[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]acetic acid (non-preferred name)(Non-covalent)
- 2 x 0V9: (19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, Y.N. et al., structure of a membrane-integrated glycosyltransferase with inhibitor. To Be Published
- Release Date
- 2023-05-17
- Peptides
- Chitin synthase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A - Membrane
-
We predict this structure to be a membrane protein.