SMTL ID : 7xsw.1 (1 other biounit)

Structure of SARS-CoV-2 antibody S309 with GX/P2V/2017 RBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 10 residues within 4Å: Chain A: Y.32, R.98, Y.100, D.115 Chain B: Y.50, T.57 Chain C: F.20, G.21, F.24, N.25 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.50, B:Y.50, B:T.57, B:T.57, A:R.98 Hydrophobic interactions: A:Y.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, Y. et al., Cross-reaction of current available SARS-CoV-2 MAbs against the pangolin-origin coronavirus GX/P2V/2017. Cell Rep (2022)

Release Date

2023-01-11

Peptides

S309 Heavy Chain: A
S309 Lambda Chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
R

S309 Heavy Chain

S309 Lambda Chain

Spike protein S1

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