SMTL ID : 7xtg.1

Cryo-EM structure of Listeria monocytogenes man-PTS complexed with pediocin PA-1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.1: 13 residues within 4Å: Chain D: N.64, V.65, G.66, A.68 Chain E: Q.20, W.23, Q.29, N.63, T.64, H.65, A.106, D.110, W.114 6 PLIP interactions: 4 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:W.23, E:N.63, E:D.110, E:W.114, D:G.66, D:G.66 MAN.2: 12 residues within 4Å: Chain H: N.64, V.65, G.66 Chain I: Q.20, W.23, Q.29, N.63, T.64, H.65, A.106, D.110, W.114 7 PLIP interactions: 5 interactions with chain I, 2 interactions with chain H Hydrogen bonds: I:Q.20, I:W.23, I:N.63, I:D.110, I:W.114, H:G.66, H:G.66 MAN.3: 10 residues within 4Å: Chain K: N.64, V.65, G.66 Chain L: W.23, Q.29, N.63, T.64, H.65, D.110, W.114 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain K Hydrogen bonds: L:N.63, L:W.114, K:G.66, K:G.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, L. et al., Structural Basis of the Immunity Mechanisms of Pediocin-like Bacteriocins. Appl.Environ.Microbiol. (2022)

Release Date

2023-06-07

Peptides

Bacteriocin curvacin-A: ACG
Sakacin-A immunity factor: BFJ
Mannose permease IIC component: DHK
Mannose permease IID component: EIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

G
G

B
B

F
F

J
J

D
D

H
H

K
Y

E
E

I
I

L
Z

Membrane

We predict this structure to be a membrane protein.
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Bacteriocin curvacin-A

Sakacin-A immunity factor

Mannose permease IIC component

Mannose permease IID component