SMTL ID : 7xvy.1

Human Estrogen Receptor beta Ligand-binding Domain in Complex with S-DPN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-2-2-mer

Ligands

2 x I0K: (2~{S})-2,3-bis(4-hydroxyphenyl)propanenitrile(Non-covalent)

I0K.1: 20 residues within 4Å: Chain A: M.40, L.43, T.44, L.46, A.47, E.50, M.81, L.84, M.85, L.88, R.91, F.101, I.118, I.121, F.122, L.125, G.217, H.220, L.221, M.224 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.46, A:A.47, A:L.84, A:I.118, A:L.221 Hydrogen bonds: A:E.50, A:R.91, A:H.220 Water bridges: A:R.91 pi-Stacking: A:F.101 I0K.2: 20 residues within 4Å: Chain B: M.40, L.43, T.44, L.46, A.47, E.50, M.81, L.84, M.85, L.88, R.91, F.101, I.118, I.121, F.122, L.125, G.217, H.220, L.221, M.224 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.43, B:L.46, B:A.47, B:L.84, B:I.118, B:L.221 Hydrogen bonds: B:L.84, B:R.91, B:H.220 Water bridges: B:R.91 pi-Stacking: B:F.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Handa, C. et al., Evaluating the correlation of binding affinities between isothermal titration calorimetry and fragment molecular orbital method of estrogen receptor beta with diarylpropionitrile (DPN) or DPN derivatives. J.Steroid Biochem.Mol.Biol. (2022)

Release Date

2022-07-20

Peptides

Estrogen receptor beta: AB
Nuclear receptor coactivator 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Estrogen receptor beta

Nuclear receptor coactivator 1

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