SMTL ID : 7xy9.1

Cryo-EM structure of secondary alcohol dehydrogenases TbSADH after carrier-free immobilization based on weak intermolecular interactions

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.43, H.65, E.66, D.156, M.157 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.43, A:H.65, A:E.66, A:D.156 ZN.6: 5 residues within 4Å: Chain B: C.43, H.65, E.66, D.156, M.157 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.43, B:H.65, B:E.66, B:D.156 ZN.9: 5 residues within 4Å: Chain C: C.43, H.65, E.66, D.156, M.157 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.43, C:H.65, C:D.156 ZN.12: 5 residues within 4Å: Chain D: C.43, H.65, E.66, D.156, M.157 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.43, D:H.65, D:E.66, D:D.156

8 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: G.303, G.304, R.305, L.306, R.307 Chain C: Q.102 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: H.106, H.108, H.163, C.301 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.106, A:H.108, A:H.163, A:C.301 MG.4: 6 residues within 4Å: Chain B: G.303, G.304, R.305, L.306, R.307 Chain D: Q.102 No protein-ligand interaction detected (PLIP) MG.5: 4 residues within 4Å: Chain B: H.106, H.108, H.163, C.301 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.106, B:H.108, B:H.163, B:C.301 MG.7: 6 residues within 4Å: Chain A: Q.102 Chain C: G.303, G.304, R.305, L.306, R.307 No protein-ligand interaction detected (PLIP) MG.8: 4 residues within 4Å: Chain C: H.106, H.108, H.163, C.301 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.106, C:H.108, C:H.163, C:C.301 MG.10: 6 residues within 4Å: Chain B: Q.102 Chain D: G.303, G.304, R.305, L.306, R.307 No protein-ligand interaction detected (PLIP) MG.11: 4 residues within 4Å: Chain D: H.106, H.108, H.163, C.301 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.106, D:H.108, D:H.163, D:C.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Q. et al., Active and stable alcohol dehydrogenase-assembled hydrogels via synergistic bridging of triazoles and metal ions. Nat Commun (2023)

Release Date

2023-06-07

Peptides

NADP-dependent isopropanol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NADP-dependent isopropanol dehydrogenase