SMTL ID : 7xyz.2 (1 other biounit)

TRIM E3 ubiquitin ligase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.62 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.10, C.13, C.30, C.33 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.10, A:C.13, A:C.30, A:C.33 ZN.2: 5 residues within 4Å: Chain A: C.25, H.27, C.49, S.51, C.52 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.25, A:H.27, A:H.27, A:S.51, A:C.52 ZN.3: 4 residues within 4Å: Chain A: C.82, H.85, C.101, C.104 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.82, A:H.85, A:C.101, A:C.104 ZN.4: 5 residues within 4Å: Chain A: C.93, D.96, S.109, H.110, H.113 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.93, A:D.96, A:D.96, A:H.110, A:H.113 ZN.5: 4 residues within 4Å: Chain B: C.10, C.13, C.30, C.33 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.10, B:C.13, B:C.30, B:C.33 ZN.6: 5 residues within 4Å: Chain B: C.25, H.27, C.49, S.51, C.52 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.25, B:H.27, B:H.27, B:C.49, B:C.52 ZN.7: 5 residues within 4Å: Chain B: C.82, H.85, C.101, V.103, C.104 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.82, B:H.85, B:C.101, B:C.104 ZN.8: 5 residues within 4Å: Chain B: C.93, D.96, T.98, H.110, H.113 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.93, B:D.96, B:H.110, B:H.110, B:H.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, S.H. et al., Structure and activation of the RING E3 ubiquitin ligase TRIM72 on the membrane. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-07-12

Peptides

Tripartite motif-containing protein 72: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Tripartite motif-containing protein 72

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