SMTL ID : 7xzr.2 (1 other biounit)

Crystal structure of TNIK-AMPPNP-thiopeptide TP15 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 16 residues within 4Å: Chain A: N.25, G.26, T.27, V.31, A.44, K.46, M.97, E.98, F.99, C.100, N.150, L.152, V.162, D.163 Chain B: R.5 Ligands: MG.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:T.27, A:K.46, A:E.98, A:C.100, A:D.163 Salt bridges: A:K.46

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: Q.149, N.150, D.163 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.163

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: H.70, H.135, H.139 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.70, A:H.135, A:H.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinogradov, A.A. et al., De Novo Discovery of Thiopeptide Pseudo-natural Products Acting as Potent and Selective TNIK Kinase Inhibitors. J.Am.Chem.Soc. (2022)

Release Date

2022-10-26

Peptides

TRAF2 and NCK-interacting protein kinase: A
thiopeptide TP15: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

TRAF2 and NCK-interacting protein kinase

thiopeptide TP15

Related Entries With Identical Sequence