SMTL ID : 7y0l.1

SulE-S209A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

homo-dimer

Ligands

2 x 1MM: METHYL 2-[({[(4-METHOXY-6-METHYL-1,3,5-TRIAZIN-2-YL)AMINO]CARBONYL}AMINO)SULFONYL]BENZOATE(Non-covalent)

1MM.1: 12 residues within 4Å: Chain A: G.78, L.80, R.150, A.209, A.210, A.234, F.257, F.293, W.296, H.333 Chain B: I.43, Y.45 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.234, A:F.257, A:F.293, A:W.296 Hydrogen bonds: A:G.78, A:R.150, A:A.210 Salt bridges: A:R.150, A:H.333 1MM.4: 14 residues within 4Å: Chain A: I.43, Y.45 Chain B: G.78, L.80, R.150, H.208, A.209, A.210, A.234, F.257, F.293, W.296, W.297, H.333 20 PLIP interactions: 17 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:R.150, B:A.234, B:F.257, B:F.293, B:W.296, B:W.297, A:I.43, A:I.43 Hydrogen bonds: B:G.78, B:A.210, A:Y.45 Water bridges: B:G.79, B:R.150, B:R.150, B:A.210, B:T.235 Salt bridges: B:R.150, B:H.208, B:H.333 pi-Stacking: B:F.257

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: N.141, S.142, K.144, F.175, M.178, G.179 Chain B: F.52, Y.53 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.141, A:N.141, A:S.142, B:Y.53 Water bridges: A:N.141, A:N.141, A:G.179, A:G.179 GOL.3: 5 residues within 4Å: Chain A: E.19, F.23, F.61, Y.107, H.199 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.19, A:Y.107, A:Y.107 Water bridges: A:H.199 GOL.5: 8 residues within 4Å: Chain A: F.52, Y.53 Chain B: N.141, S.142, K.144, F.175, M.178, G.179 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.141, B:S.142, A:Y.53 Water bridges: B:N.141, B:N.141, B:G.179, B:G.179 GOL.6: 5 residues within 4Å: Chain A: G.27, R.28, T.29 Chain B: D.172, K.176 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.172, B:D.172, B:K.176, A:T.29 GOL.7: 4 residues within 4Å: Chain B: P.284, K.285, N.286, K.288 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.285, B:N.286, B:N.286, B:K.288 Water bridges: B:K.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, B. et al., Crystal structures of herbicide-detoxifying esterase reveal a lid loop affecting substrate binding and activity. Nat Commun (2023)

Release Date

2023-08-02

Peptides

Alpha/beta fold hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha/beta fold hydrolase