SMTL ID : 7y0s.1

Crystal structure of the P450 BM3 heme domain mutant F87A in complex with N-imidazolyl-hexanoyl-L-tyrosyl-L-tyrosine and hydroxylamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

2 x I7X- TYR- TYR: I7X-TYR-TYR(Non-covalent)

I7X-TYR-TYR.1: 22 residues within 4Å: Chain A: L.19, L.22, P.27, V.28, L.31, F.44, A.46, R.49, Y.53, S.74, Q.75, A.76, M.187, L.190, T.270, A.330, P.331, A.332, M.356, L.439 Ligands: HEM.3, HOA.4 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.19, A:L.22, A:P.27, A:P.27, A:V.28, A:F.44, A:A.76, A:L.190 Hydrogen bonds: A:R.49, A:Q.75, A:A.76 Water bridges: A:S.74 Salt bridges: A:R.49 pi-Cation interactions: A:R.49 I7X-TYR-TYR.2: 22 residues within 4Å: Chain B: L.19, L.22, P.27, V.28, L.31, F.44, A.46, R.49, Y.53, S.74, Q.75, A.76, M.187, L.190, Q.191, A.330, P.331, A.332, M.356, L.439 Ligands: HEM.5, HOA.6 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:L.19, B:L.22, B:P.27, B:P.27, B:V.28, B:F.44, B:A.76, B:A.330 Hydrogen bonds: B:R.49, B:Y.53, B:S.74, B:Q.75, B:A.76, B:M.187, B:Q.191 Salt bridges: B:R.49 pi-Cation interactions: B:R.49

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 30 residues within 4Å: Chain A: K.71, L.77, L.88, A.89, W.98, F.109, I.155, T.262, F.263, A.266, G.267, T.270, T.271, L.274, L.324, T.329, A.330, F.333, P.394, F.395, G.396, R.400, A.401, C.402, I.403, G.404, F.407, A.408 Ligands: I7X-TYR-TYR.1, HOA.4 23 PLIP interactions: 23 interactions with chain A, Hydrophobic interactions: A:L.88, A:A.89, A:F.109, A:I.155, A:T.262, A:F.263, A:F.263, A:A.266, A:L.274, A:A.330, A:F.395, A:I.403 Hydrogen bonds: A:R.400 Water bridges: A:K.71, A:K.71, A:H.102, A:S.334, A:S.334, A:A.401 Salt bridges: A:K.71, A:K.71, A:R.400 Metal complexes: A:C.402 HEM.5: 29 residues within 4Å: Chain B: K.71, L.77, L.88, A.89, W.98, F.109, I.155, F.263, A.266, G.267, T.270, T.271, L.274, L.324, T.329, A.330, F.333, P.394, F.395, G.396, R.400, A.401, C.402, I.403, G.404, F.407, A.408 Ligands: I7X-TYR-TYR.2, HOA.6 24 PLIP interactions: 24 interactions with chain B, Hydrophobic interactions: B:L.88, B:A.89, B:F.109, B:I.155, B:F.263, B:F.263, B:A.266, B:L.274, B:F.395, B:I.403, B:F.407 Hydrogen bonds: B:R.400 Water bridges: B:K.71, B:K.71, B:H.102, B:S.334, B:S.334, B:S.334, B:N.397, B:A.401 Salt bridges: B:K.71, B:K.71, B:R.400 Metal complexes: B:C.402

2 x HOA: HYDROXYAMINE(Non-covalent)

HOA.4: 4 residues within 4Å: Chain A: A.266, T.270 Ligands: I7X-TYR-TYR.1, HEM.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.266, A:T.270 HOA.6: 4 residues within 4Å: Chain B: A.266, T.270 Ligands: I7X-TYR-TYR.2, HEM.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y. et al., Crystal structure of the P450 BM3 heme domain mutant F87A in complex with N-imidazolyl-hexanoyl-L-tyrosyl-L-tyrosine and hydroxylamine. To Be Published

Release Date

2023-06-14

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Bifunctional cytochrome P450/NADPH--P450 reductase

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