SMTL ID : 7y0v.1

The co-crystal structure of BA.1-RBD with Fab-5549

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 13 residues within 4Å: Chain A: A.59, Y.60, K.61, H.106, Y.108 Chain B: N.93, A.94, N.95 Chain C: D.15, F.18, N.19, V.43, L.44 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.95 Hydrophobic interactions: A:Y.108, A:Y.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, Y. et al., Rational identification of potent and broad sarbecovirus-neutralizing antibody cocktails from SARS convalescents. Cell Rep (2022)

Release Date

2022-09-28

Peptides

5549-Fab: A
5549-Fab: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
R

5549-Fab

5549-Fab

Spike protein S1