SMTL ID : 7y0w.1

Local structure of BD55-5514 and BD55-5840 Fab and Omicron BA.1 RBD complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 14 residues within 4Å: Chain C: W.46, T.58, Y.59, A.60, Q.61 Chain D: W.96, P.97 Chain E: F.4, D.5, F.8, N.9, L.34, Y.35, N.36 5 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: C:T.58, C:T.58, C:Y.59, C:A.60, C:Q.61, C:Q.61, C:Q.61, E:Y.35 Hydrophobic interactions: D:W.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, Y. et al., Rational identification of potent and broad sarbecovirus-neutralizing antibody cocktails from SARS convalescents. Cell Rep (2022)

Release Date

2022-09-28

Peptides

BD55-5514H: A
BD55-5514L: B
BD55-5840H: C
BD55-5840L: D
Spike protein S1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

E
R

BD55-5514H

BD55-5514L

BD55-5840H

BD55-5840L

Spike protein S1

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