SMTL ID : 7y10.1 (1 other biounit)

Crystal structure of AtSFH5-Sec14 in complex with DPPA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x PX6: 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE(Non-covalent)

PX6.1: 25 residues within 4Å: Chain A: Y.89, Y.93, Y.104, E.106, L.108, P.113, M.117, F.133, S.155, T.157, L.159, V.164, P.172, A.173, I.177, Q.181, T.191, L.192, M.195, I.197, V.207, V.211, L.215, T.219, I.223 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.108, A:P.113, A:L.159, A:V.164, A:P.172, A:I.177, A:I.177, A:I.197, A:V.207, A:V.211, A:L.215, A:T.219, A:I.223 Hydrogen bonds: A:Y.93, A:S.155, A:T.157, A:Q.181, A:T.191 Water bridges: A:S.155, A:S.155, A:D.184

2 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 4 residues within 4Å: Chain A: H.94, C.251, C.253, C.259 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.94, A:C.251, A:C.253, A:C.259 NI.3: 4 residues within 4Å: Chain A: D.7, H.9, H.38, C.283 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.7, A:D.7, A:H.9, A:H.38, A:C.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, H.Y. et al., Arabidopsis Sec14 proteins (SFH5 and SFH7) mediate interorganelle transport of phosphatidic acid and regulate chloroplast development. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-05-31

Peptides

Phosphatidylinositol/phosphatidylcholine transfer protein SFH5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphatidylinositol/phosphatidylcholine transfer protein SFH5

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