SMTL ID : 7y13.1

Cryo-EM structure of apo-state MrgD-Gi complex (local)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

7 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 7 residues within 4Å: Chain A: K.221, R.228, L.229, S.286, F.292, L.293 Ligands: PLM.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.228, A:L.229, A:F.292, A:L.293 PLM.2: 6 residues within 4Å: Chain A: G.283, F.292, L.293, K.294 Ligands: PLM.1, PLM.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.293, A:L.293, A:K.294 Hydrogen bonds: A:F.292 Salt bridges: A:K.294 PLM.3: 7 residues within 4Å: Chain A: L.280, G.283, L.284, S.287, F.288, K.294 Ligands: PLM.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.284, A:F.288 Salt bridges: A:K.294 PLM.4: 5 residues within 4Å: Chain A: I.188, N.192, H.265, A.268, W.275 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.268, A:W.275, A:W.275 Salt bridges: A:H.182, A:H.265 PLM.5: 4 residues within 4Å: Chain A: F.254, W.257, L.266 Ligands: PLM.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.257, A:L.266 PLM.6: 7 residues within 4Å: Chain A: L.277, C.278, M.281, L.284, V.306, L.310 Ligands: PLM.7 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.277, A:L.277, A:M.281, A:L.284, A:V.306, A:L.310, A:L.310 PLM.7: 12 residues within 4Å: Chain A: Y.189, T.242, A.243, T.246, Q.247, L.250, R.262, L.266, V.270, L.310 Ligands: PLM.5, PLM.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.242, A:A.243, A:Q.247, A:L.250, A:V.270, A:L.310 Hydrogen bonds: A:Y.189 Salt bridges: A:R.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, S. et al., Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM. Commun Biol (2022)

Release Date

2022-07-20

Peptides

Soluble cytochrome b562,Mas-related G-protein coupled receptor member D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Soluble cytochrome b562,Mas-related G-protein coupled receptor member D

Related Entries With Identical Sequence