SMTL ID : 7y1r.1

Human L-TGF-beta1 in complex with the anchor protein LRRC33

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

5 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 2 residues within 4Å: Chain A: N.123, S.125 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 3 residues within 4Å: Chain C: N.72, S.95, R.96 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 1 residues within 4Å: Chain C: N.153 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.6: 5 residues within 4Å: Chain A: K.291 Chain C: D.380, S.382, N.406, D.430 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.291 NAG-NAG-BMA.7: 6 residues within 4Å: Chain C: Q.187, N.209, A.211, F.212, N.230, D.254 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: E.62, L.65, A.66, N.69, R.72 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 4 residues within 4Å: Chain B: E.106, N.123, S.125, E.126 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 3 residues within 4Å: Chain B: Y.68, N.69, R.72 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.68 Hydrogen bonds: B:N.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duan, Z. et al., Specificity of TGF-beta 1 signal designated by LRRC33 and integrin alpha V beta 8. Nat Commun (2022)

Release Date

2022-08-31

Peptides

Transforming growth factor beta-1 proprotein: AB
Transforming growth factor beta activator LRRC33: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

Transforming growth factor beta-1 proprotein

Transforming growth factor beta activator LRRC33

Related Entries With Identical Sequence