SMTL ID : 7y3n.1 (2 other biounits)

Crystal structure of SARS-CoV receptor binding domain in complex with human antibody BIOLS56

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.97 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 4 residues within 4Å: Chain A: N.52, T.54, F.55, N.122 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.122 Hydrophobic interactions: A:T.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rao, X. et al., Defining a de novo non-RBM antibody as RBD-8 and its synergistic rescue of immune-evaded antibodies to neutralize Omicron SARS-CoV-2. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-12-27

Peptides

Spike protein S1: A
Heavy chain of BIOLS56: B
Light chain of BIOLS56: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

Heavy chain of BIOLS56

Light chain of BIOLS56

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