SMTL ID : 7y3o.1

Crystal structure of SARS-CoV-2 receptor binding domain in complex with human antibody BIOLS56

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain C: G.6, F.9, N.10, L.35 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.9, C:L.35 Hydrogen bonds: C:N.10 Water bridges: C:G.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rao, X. et al., Defining a de novo non-RBM antibody as RBD-8 and its synergistic rescue of immune-evaded antibodies to neutralize Omicron SARS-CoV-2. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-12-27

Peptides

Heavy chain of BIOLS56: A
Light chain of BIOLS56: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

Heavy chain of BIOLS56

Light chain of BIOLS56

Spike protein S1

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