- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN- NAG- MAN: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-FUC.3: 3 residues within 4Å:- Chain B: N.194, T.196, Y.206
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:T.196
NAG-NAG-BMA-MAN-FUC.7: 3 residues within 4Å:- Chain E: N.194, T.196, Y.206
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:T.196
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x K: POTASSIUM ION(Non-covalent)
K.9: 4 residues within 4Å:- Chain A: L.730, K.731, A.733, D.752
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:L.730, A:K.731, A:A.733, A:D.752
K.10: 4 residues within 4Å:- Chain A: T.784, S.787, N.788, D.816
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:T.784, A:S.787, A:D.816, H2O.1
K.11: 7 residues within 4Å:- Chain A: V.334, A.335, V.337, E.339, N.788, E.791, D.816
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:V.334, A:A.335, A:D.816
K.29: 4 residues within 4Å:- Chain D: L.730, K.731, A.733, D.752
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:L.730, D:K.731, D:A.733, D:D.752
K.30: 4 residues within 4Å:- Chain D: T.784, S.787, N.788, D.816
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:T.784, D:S.787, D:D.816, H2O.1
K.31: 7 residues within 4Å:- Chain D: V.334, A.335, V.337, E.339, N.788, E.791, D.816
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:V.334, D:A.335, D:D.816
- 8 x CLR: CHOLESTEROL(Non-covalent)
CLR.12: 11 residues within 4Å:- Chain A: Y.975, P.990, F.994, F.997
- Chain C: L.39, V.42, G.43, V.46
- Ligands: PCW.16, PCW.28, PCW.48
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:F.994, A:F.994, A:F.997, C:V.46
CLR.13: 12 residues within 4Å:- Chain A: F.872, E.880, S.991, F.994, C.995
- Chain B: V.57, L.58, T.61, K.68
- Chain D: L.1005
- Ligands: PCW.35, PCW.37
7 PLIP interactions:1 interactions with chain A, 5 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: A:F.872, B:V.57, B:L.58, B:T.61, D:L.1005
- Hydrogen bonds: B:K.68, B:K.68
CLR.25: 8 residues within 4Å:- Chain A: E.852
- Chain B: R.28, W.33, I.36, Y.40, Y.44
- Ligands: PCW.21, PCW.23
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.33, B:I.36, B:Y.40
- Hydrogen bonds: B:R.28
CLR.26: 4 residues within 4Å:- Chain B: G.49, I.52, Q.56
- Ligands: CLR.46
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.52, B:Q.56
CLR.32: 11 residues within 4Å:- Chain D: Y.975, P.990, F.994, F.997
- Chain F: L.39, V.42, G.43, V.46
- Ligands: PCW.28, PCW.36, PCW.48
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain F- Hydrophobic interactions: D:F.994, D:F.994, D:F.997, F:V.46
CLR.33: 12 residues within 4Å:- Chain A: L.1005
- Chain D: F.872, E.880, S.991, F.994, C.995
- Chain E: V.57, L.58, T.61, K.68
- Ligands: PCW.15, PCW.17
6 PLIP interactions:5 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:V.57, E:L.58, E:T.61, D:F.872
- Hydrogen bonds: E:K.68, E:K.68
CLR.45: 8 residues within 4Å:- Chain D: E.852
- Chain E: R.28, W.33, I.36, Y.40, Y.44
- Ligands: PCW.41, PCW.43
4 PLIP interactions:4 interactions with chain E- Hydrophobic interactions: E:W.33, E:I.36, E:Y.40
- Hydrogen bonds: E:R.28
CLR.46: 4 residues within 4Å:- Chain E: G.49, I.52, Q.56
- Ligands: CLR.26
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:I.52, E:Q.56
- 26 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PCW.14: 2 residues within 4Å:- Chain A: H.295, H.298
Ligand excluded by PLIPPCW.15: 15 residues within 4Å:- Chain A: I.865, Y.999, I.1002, L.1005, Y.1006, M.1009, I.1013, W.1021, Q.1024
- Chain B: K.35, L.38, I.42, L.47, I.50
- Ligands: CLR.33
Ligand excluded by PLIPPCW.16: 15 residues within 4Å:- Chain A: W.936, F.950, Q.951, Q.952, G.953, M.954, K.955, T.967, F.997, S.1000, L.1001
- Ligands: CLR.12, PCW.17, PCW.28, PCW.37
Ligand excluded by PLIPPCW.17: 15 residues within 4Å:- Chain A: S.948, F.950, Q.951, F.1004, L.1005, E.1008, F.1012, R.1015
- Chain D: P.998, L.1001
- Chain E: T.61, K.68
- Ligands: PCW.16, CLR.33, PCW.37
Ligand excluded by PLIPPCW.18: 9 residues within 4Å:- Chain A: N.132, Y.136, V.810, C.814, L.817, V.981, A.982, L.983
- Ligands: PCW.19
Ligand excluded by PLIPPCW.19: 7 residues within 4Å:- Chain A: F.972, G.978, D.980, A.982
- Chain C: I.55
- Ligands: PCW.18, PCW.20
Ligand excluded by PLIPPCW.20: 10 residues within 4Å:- Chain A: F.972, C.976, P.977
- Chain C: Y.37, R.40, V.41, L.44, I.45, V.52
- Ligands: PCW.19
Ligand excluded by PLIPPCW.21: 15 residues within 4Å:- Chain A: T.793, M.864, L.868, F.875, L.884, P.885, M.886, I.889
- Chain B: Y.44, A.48, F.51, I.55, Q.56, L.59
- Ligands: CLR.25
Ligand excluded by PLIPPCW.22: 8 residues within 4Å:- Chain A: F.151, T.350, L.351, K.354, R.358, Y.829
- Ligands: PCW.24, PCW.27
Ligand excluded by PLIPPCW.23: 8 residues within 4Å:- Chain A: V.303, L.796, E.852, Y.859
- Chain B: F.16, L.26, F.37
- Ligands: CLR.25
Ligand excluded by PLIPPCW.24: 3 residues within 4Å:- Chain A: Y.154, K.354
- Ligands: PCW.22
Ligand excluded by PLIPPCW.27: 6 residues within 4Å:- Chain A: R.358, Y.829, I.958
- Chain C: L.58, K.62
- Ligands: PCW.22
Ligand excluded by PLIPPCW.28: 7 residues within 4Å:- Chain A: P.990, F.994
- Chain C: Y.34
- Ligands: CLR.12, PCW.16, CLR.32, PCW.48
Ligand excluded by PLIPPCW.34: 2 residues within 4Å:- Chain D: H.295, H.298
Ligand excluded by PLIPPCW.35: 15 residues within 4Å:- Chain D: I.865, Y.999, I.1002, L.1005, Y.1006, M.1009, I.1013, W.1021, Q.1024
- Chain E: K.35, L.38, I.42, L.47, I.50
- Ligands: CLR.13
Ligand excluded by PLIPPCW.36: 14 residues within 4Å:- Chain D: W.936, F.950, Q.951, Q.952, G.953, M.954, K.955, T.967, F.997, S.1000, L.1001
- Ligands: CLR.32, PCW.37, PCW.48
Ligand excluded by PLIPPCW.37: 17 residues within 4Å:- Chain A: F.994, P.998, L.1001
- Chain B: T.61, K.68
- Chain D: S.948, F.950, Q.951, F.1004, L.1005, E.1008, F.1012, R.1015
- Ligands: CLR.13, PCW.16, PCW.17, PCW.36
Ligand excluded by PLIPPCW.38: 9 residues within 4Å:- Chain D: N.132, Y.136, V.810, C.814, L.817, V.981, A.982, L.983
- Ligands: PCW.39
Ligand excluded by PLIPPCW.39: 7 residues within 4Å:- Chain D: F.972, G.978, D.980, A.982
- Chain F: I.55
- Ligands: PCW.38, PCW.40
Ligand excluded by PLIPPCW.40: 10 residues within 4Å:- Chain D: F.972, C.976, P.977
- Chain F: Y.37, R.40, V.41, L.44, I.45, V.52
- Ligands: PCW.39
Ligand excluded by PLIPPCW.41: 15 residues within 4Å:- Chain D: T.793, M.864, L.868, F.875, L.884, P.885, M.886, I.889
- Chain E: Y.44, A.48, F.51, I.55, Q.56, L.59
- Ligands: CLR.45
Ligand excluded by PLIPPCW.42: 8 residues within 4Å:- Chain D: F.151, T.350, L.351, K.354, R.358, Y.829
- Ligands: PCW.44, PCW.47
Ligand excluded by PLIPPCW.43: 8 residues within 4Å:- Chain D: V.303, L.796, E.852, Y.859
- Chain E: F.16, L.26, F.37
- Ligands: CLR.45
Ligand excluded by PLIPPCW.44: 3 residues within 4Å:- Chain D: Y.154, K.354
- Ligands: PCW.42
Ligand excluded by PLIPPCW.47: 6 residues within 4Å:- Chain D: R.358, Y.829, I.958
- Chain F: L.58, K.62
- Ligands: PCW.42
Ligand excluded by PLIPPCW.48: 7 residues within 4Å:- Chain D: P.990, F.994
- Chain F: Y.34
- Ligands: CLR.12, PCW.28, CLR.32, PCW.36
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kanai, R. et al., Cryo-electron microscopy of Na + ,K + -ATPase reveals how the extracellular gate locks in the E2·2K + state. Febs Lett. (2022)
- Release Date
- 2022-07-13
- Peptides
- Na, K-ATPase alpha subunit: AD
Na+,K+-ATPase beta subunit: BE
FXYD domain-containing ion transport regulator: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CD
AB
DE
BC
EF
G - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN- NAG- MAN: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x K: POTASSIUM ION(Non-covalent)
- 8 x CLR: CHOLESTEROL(Non-covalent)
- 26 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kanai, R. et al., Cryo-electron microscopy of Na + ,K + -ATPase reveals how the extracellular gate locks in the E2·2K + state. Febs Lett. (2022)
- Release Date
- 2022-07-13
- Peptides
- Na, K-ATPase alpha subunit: AD
Na+,K+-ATPase beta subunit: BE
FXYD domain-containing ion transport regulator: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CD
AB
DE
BC
EF
G - Membrane
-
We predict this structure to be a membrane protein.