SMTL ID : 7y4a.1 (3 other biounits)

Crystal structure of human ELMO1 RBD-RhoG complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.24, T.42 Ligands: PO4.2, GDP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.24, A:T.42, H2O.1, H2O.5

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 13 residues within 4Å: Chain A: G.19, A.20, K.23, T.24, Y.39, P.41, T.42, T.65, A.66, G.67, Q.68 Ligands: MG.1, GDP.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:A.20, A:Y.39, A:Y.39, A:Y.39, A:T.42, A:T.65, A:G.67, A:Q.68 Water bridges: A:T.24, A:T.42 Salt bridges: A:K.23

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 18 residues within 4Å: Chain A: D.18, G.19, A.20, V.21, G.22, K.23, T.24, C.25, F.35, Y.39, K.123, D.125, L.126, S.165, A.166, L.167 Ligands: MG.1, PO4.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:D.18, A:A.20, A:V.21, A:G.22, A:K.23, A:T.24, A:C.25, A:K.123, A:K.123, A:A.166, A:L.167 Water bridges: A:L.26, A:T.42, A:T.42, A:T.42 Salt bridges: A:K.23, A:D.125 pi-Stacking: A:F.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tam, C. et al., Targeting Ras-binding domain of ELMO1 by computational nanobody design. Commun Biol (2023)

Release Date

2023-03-15

Peptides

Rho-related GTP-binding protein RhoG: A
Engulfment and cell motility protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rho-related GTP-binding protein RhoG

Engulfment and cell motility protein 1

Related Entries With Identical Sequence