SMTL ID : 7y4p.1

Human Plexin A1, extracellular domains 1-4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: V.551, A.602, T.605, R.606, N.636, S.638, V.639 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.606 NAG-NAG.2: 5 residues within 4Å: Chain A: P.546, R.547, N.548, S.650, F.651 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: N.573, E.581, E.583, K.619 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.573, A:E.581 NAG.4: 5 residues within 4Å: Chain A: R.18, S.51, G.52, N.53, T.55 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.51, A:G.52, A:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, T. et al., Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D. Protein Sci. (2022)

Release Date

2022-10-19

Peptides

Plexin-A1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Plexin-A1