SMTL ID : 7y68.1

SIDT2-pH5.5 plus miRNA

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: E.34, N.54 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.34 NAG-NAG.2: 3 residues within 4Å: Chain A: N.165, Q.277, T.279 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain B: E.34, N.54 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.34 NAG-NAG.4: 3 residues within 4Å: Chain B: N.165, Q.277, T.279 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.568, D.579, H.796, H.800 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.568, A:H.796, A:H.800 ZN.10: 4 residues within 4Å: Chain B: H.568, D.579, H.796, H.800 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.568, B:H.796, B:H.800

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain A: N.27 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain A: E.42, N.44, N.141 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.42 Hydrogen bonds: A:N.141 NAG.8: 2 residues within 4Å: Chain A: K.122, N.123 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.123 NAG.9: 2 residues within 4Å: Chain A: T.58, N.60 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.60 NAG.11: 1 residues within 4Å: Chain B: N.27 No protein-ligand interaction detected (PLIP) NAG.12: 3 residues within 4Å: Chain B: E.42, N.44, N.141 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.42 Hydrogen bonds: B:N.141 NAG.13: 2 residues within 4Å: Chain B: K.122, N.123 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.123 NAG.14: 2 residues within 4Å: Chain B: T.58, N.60 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qian, D. et al., Structural insight into the human SID1 transmembrane family member 2 reveals its lipid hydrolytic activity. Nat Commun (2023)

Release Date

2023-06-21

Peptides

SID1 transmembrane family member 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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SID1 transmembrane family member 2

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