- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-24-mer
- Ligands
- 24 x FE2: FE (II) ION(Non-covalent)
- 24 x FE: FE (III) ION(Non-covalent)
FE.2: 5 residues within 4Å:- Chain A: E.47, E.51, E.94, E.127, H.130
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.51
FE.5: 4 residues within 4Å:- Chain B: E.47, E.51, E.127, H.130
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:E.51
FE.7: 2 residues within 4Å:- Chain C: V.93, A.97
No protein-ligand interaction detected (PLIP)FE.10: 4 residues within 4Å:- Chain D: E.47, E.51, E.127, H.130
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:E.51
FE.12: 4 residues within 4Å:- Chain E: E.47, E.51, E.127, H.130
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:E.47, E:E.51
FE.13: 4 residues within 4Å:- Chain F: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:E.18, F:E.18, F:E.51, F:H.54, F:E.127
FE.17: 5 residues within 4Å:- Chain G: E.47, E.51, E.94, E.127, H.130
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:E.51
FE.20: 5 residues within 4Å:- Chain H: Y.25, E.51, E.94, E.127, H.130
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:E.94, H:E.94, H:E.127
FE.22: 5 residues within 4Å:- Chain I: E.47, E.51, E.94, E.127, H.130
1 PLIP interactions:1 interactions with chain I- Metal complexes: I:E.51
FE.25: 5 residues within 4Å:- Chain J: E.47, E.51, E.94, E.127, H.130
1 PLIP interactions:1 interactions with chain J- Metal complexes: J:E.51
FE.28: 4 residues within 4Å:- Chain K: E.18, E.51, H.54, E.127
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:E.18, K:E.18, K:E.51, K:E.127
FE.30: 3 residues within 4Å:- Chain L: E.47, E.51, E.127
1 PLIP interactions:1 interactions with chain L- Metal complexes: L:E.51
FE.33: 5 residues within 4Å:- Chain M: Y.25, E.51, E.94, E.127, H.130
3 PLIP interactions:3 interactions with chain M- Metal complexes: M:E.94, M:E.94, M:E.127
FE.34: 4 residues within 4Å:- Chain N: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain N- Metal complexes: N:E.18, N:E.18, N:E.51, N:H.54, N:E.127
FE.36: 4 residues within 4Å:- Chain O: E.47, E.51, E.94, E.127
1 PLIP interactions:1 interactions with chain O- Metal complexes: O:E.51
FE.39: 4 residues within 4Å:- Chain P: E.47, E.51, E.127, H.130
1 PLIP interactions:1 interactions with chain P- Metal complexes: P:E.51
FE.42: 4 residues within 4Å:- Chain Q: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain Q- Metal complexes: Q:E.18, Q:E.18, Q:E.51, Q:H.54, Q:E.127
FE.45: 4 residues within 4Å:- Chain R: E.51, E.94, E.127, H.130
4 PLIP interactions:4 interactions with chain R- Metal complexes: R:E.51, R:E.94, R:E.94, R:E.127
FE.47: 4 residues within 4Å:- Chain S: E.47, E.51, E.127, H.130
1 PLIP interactions:1 interactions with chain S- Metal complexes: S:E.51
FE.49: 4 residues within 4Å:- Chain T: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain T- Metal complexes: T:E.18, T:E.18, T:E.51, T:H.54, T:E.127
FE.53: 4 residues within 4Å:- Chain U: E.47, E.51, E.127, H.130
1 PLIP interactions:1 interactions with chain U- Metal complexes: U:E.51
FE.54: 3 residues within 4Å:- Chain V: E.47, E.51, E.127
1 PLIP interactions:1 interactions with chain V- Metal complexes: V:E.51
FE.57: 5 residues within 4Å:- Chain W: E.51, E.94, E.127, H.130
- Ligands: FE2.56
3 PLIP interactions:3 interactions with chain W- Metal complexes: W:E.51, W:E.94, W:E.127
FE.59: 4 residues within 4Å:- Chain X: E.47, E.51, E.127, H.130
1 PLIP interactions:1 interactions with chain X- Metal complexes: X:E.51
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)
HEM.3: 10 residues within 4Å:- Chain A: L.19, N.23, F.26, M.52, E.56
- Chain B: L.19, N.23, F.26, M.52, Y.71
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B,- Hydrophobic interactions: A:F.26, A:M.52, B:F.26, B:F.26
- Hydrogen bonds: B:Y.71
HEM.8: 14 residues within 4Å:- Chain C: I.22, N.23, F.26, R.45, M.52, R.53, H.54, E.56
- Chain D: L.19, I.22, F.26, M.52, E.56, Y.71
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain D,- Hydrophobic interactions: C:M.52, C:E.56, D:F.26
- Hydrogen bonds: C:E.56, C:E.56
- Salt bridges: C:R.53
HEM.15: 15 residues within 4Å:- Chain E: L.19, N.23, F.26, F.49, M.52, R.53, E.56, Y.71
- Chain F: L.19, N.23, F.26, R.45, F.49, M.52, Y.71
12 PLIP interactions:3 interactions with chain E, 9 interactions with chain F,- Hydrophobic interactions: E:F.26, E:E.56, E:Y.71, F:L.19, F:F.26, F:F.26, F:F.49, F:F.49, F:F.49, F:M.52, F:Y.71
- Salt bridges: F:R.45
HEM.18: 12 residues within 4Å:- Chain G: L.19, F.26, F.49, M.52, E.56, Y.71
- Chain X: L.19, N.23, F.26, F.49, M.52, Y.71
9 PLIP interactions:6 interactions with chain G, 3 interactions with chain X,- Hydrophobic interactions: G:F.26, G:F.49, G:M.52, G:E.56, G:Y.71, X:L.19, X:F.26, X:F.49
- pi-Stacking: G:F.26
HEM.21: 15 residues within 4Å:- Chain H: L.19, N.23, F.49, M.52, R.53, A.55, E.56, V.57, Y.71
- Chain N: N.23, F.26, R.45, F.49, M.52, Y.71
13 PLIP interactions:8 interactions with chain H, 5 interactions with chain N,- Hydrophobic interactions: H:L.19, H:F.49, H:M.52, H:R.53, H:A.55, H:E.56, H:Y.71, N:F.26, N:F.26, N:F.26, N:Y.71
- Hydrogen bonds: H:R.53, N:R.45
HEM.26: 19 residues within 4Å:- Chain J: L.19, I.22, N.23, F.26, R.45, F.49, M.52, A.55, E.56, Y.71
- Chain K: L.19, I.22, N.23, F.26, F.49, M.52, R.53, A.55, E.56
4 PLIP interactions:3 interactions with chain J, 1 interactions with chain K,- Hydrophobic interactions: J:F.26, J:F.49, J:M.52, K:F.26
HEM.31: 18 residues within 4Å:- Chain L: L.19, I.22, N.23, F.26, R.45, M.52, R.53, A.55, E.56, Y.71
- Chain M: L.19, N.23, F.26, R.45, F.49, M.52, E.56, Y.71
11 PLIP interactions:6 interactions with chain L, 5 interactions with chain M,- Hydrophobic interactions: L:F.26, L:F.26, L:A.55, M:L.19, M:F.26, M:M.52, M:Y.71
- Hydrogen bonds: L:M.52, L:R.53, L:Y.71
- Salt bridges: M:R.45
HEM.40: 18 residues within 4Å:- Chain O: L.19, I.22, N.23, F.26, R.45, M.52, A.55, E.56, Y.71
- Chain P: L.19, I.22, N.23, F.26, R.45, M.52, A.55, E.56, Y.71
8 PLIP interactions:4 interactions with chain O, 4 interactions with chain P,- Hydrophobic interactions: O:L.19, O:F.26, O:M.52, O:Y.71, P:L.19, P:F.26, P:M.52
- Hydrogen bonds: P:N.23
HEM.43: 17 residues within 4Å:- Chain Q: L.19, I.22, N.23, F.26, R.45, M.52, E.56, Y.71
- Chain R: L.19, N.23, F.26, R.45, F.49, M.52, A.55, E.56, Y.71
11 PLIP interactions:2 interactions with chain Q, 9 interactions with chain R,- Hydrophobic interactions: Q:I.22, Q:F.26, R:L.19, R:F.26, R:F.26, R:F.26, R:F.49, R:F.49, R:M.52, R:Y.71
- Salt bridges: R:R.45
HEM.48: 12 residues within 4Å:- Chain I: L.19, F.26, F.49, M.52, E.56, Y.71
- Chain S: I.22, N.23, F.26, R.45, F.49, M.52
10 PLIP interactions:6 interactions with chain I, 4 interactions with chain S,- Hydrophobic interactions: I:L.19, I:F.26, I:F.26, I:F.49, I:E.56, I:Y.71, S:I.22, S:F.26, S:F.49
- Salt bridges: S:R.45
HEM.50: 16 residues within 4Å:- Chain T: L.19, N.23, F.26, F.49, M.52, A.55, E.56, Y.71
- Chain U: L.19, I.22, N.23, F.26, L.27, R.45, M.52, E.56
12 PLIP interactions:5 interactions with chain T, 7 interactions with chain U,- Hydrophobic interactions: T:L.19, T:F.26, T:M.52, T:E.56, T:Y.71, U:L.19, U:N.23, U:F.26, U:F.26, U:M.52
- Hydrogen bonds: U:L.27
- pi-Stacking: U:F.26
HEM.58: 13 residues within 4Å:- Chain V: N.23, F.26, R.45, M.52, E.56, Y.71
- Chain W: L.19, N.23, F.26, R.45, M.52, E.56, Y.71
7 PLIP interactions:6 interactions with chain W, 1 interactions with chain V,- Hydrophobic interactions: W:L.19, W:F.26, W:F.26, W:M.52, W:Y.71, V:F.26
- Salt bridges: W:R.45
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jobichen, C. et al., Bacterioferritin nanocage structures uncover the biomineralization process in ferritins. Pnas Nexus (2023)
- Release Date
- 2023-07-05
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
X
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-24-mer
- Ligands
- 24 x FE2: FE (II) ION(Non-covalent)
- 24 x FE: FE (III) ION(Non-covalent)
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jobichen, C. et al., Bacterioferritin nanocage structures uncover the biomineralization process in ferritins. Pnas Nexus (2023)
- Release Date
- 2023-07-05
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
X