SMTL ID : 7y77.1

Crystal structure of rice NAL1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: F.81, R.90, I.91, R.92, K.93, V.106, R.108, K.109, V.110, H.111, K.112, L.115, Q.119, C.120, L.121, V.135, D.136, V.137 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:F.81, A:K.93, A:V.110, A:L.121, A:D.136, A:V.137 Salt bridges: A:R.90, A:R.90, A:R.92, A:K.109, A:K.109, A:K.109 ATP.2: 18 residues within 4Å: Chain B: F.81, R.90, I.91, R.92, K.93, V.106, R.108, K.109, V.110, H.111, K.112, L.115, Q.119, C.120, L.121, V.135, D.136, V.137 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:K.93, B:V.110, B:Q.119, B:L.121, B:D.136, B:D.136, B:V.137 Salt bridges: B:R.90, B:R.90, B:R.92, B:K.109, B:K.109, B:K.109 ATP.3: 18 residues within 4Å: Chain C: F.81, R.90, I.91, R.92, K.93, V.106, R.108, K.109, V.110, H.111, K.112, L.115, Q.119, C.120, L.121, V.135, D.136, V.137 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:F.81, C:K.93, C:V.110, C:L.121, C:D.136, C:V.137 Salt bridges: C:R.90, C:R.90, C:R.92, C:K.109, C:K.109, C:K.109 ATP.4: 18 residues within 4Å: Chain D: F.81, R.90, I.91, R.92, K.93, V.106, R.108, K.109, V.110, H.111, K.112, L.115, Q.119, C.120, L.121, V.135, D.136, V.137 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:F.81, D:K.93, D:V.110, D:L.121, D:D.136, D:D.136, D:V.137 Salt bridges: D:R.90, D:R.90, D:R.92, D:K.109, D:K.109, D:K.109 ATP.5: 18 residues within 4Å: Chain E: F.81, R.90, I.91, R.92, K.93, V.106, R.108, K.109, V.110, H.111, K.112, L.115, Q.119, C.120, L.121, V.135, D.136, V.137 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:K.93, E:V.110, E:Q.119, E:L.121, E:D.136, E:V.137 Salt bridges: E:R.90, E:R.90, E:R.92, E:K.109, E:K.109, E:K.109 ATP.6: 18 residues within 4Å: Chain F: F.81, R.90, I.91, R.92, K.93, V.106, R.108, K.109, V.110, H.111, K.112, L.115, Q.119, C.120, L.121, V.135, D.136, V.137 13 PLIP interactions: 13 interactions with chain F Hydrogen bonds: F:F.81, F:K.93, F:V.110, F:L.121, F:D.136, F:D.136, F:V.137 Salt bridges: F:R.90, F:R.90, F:R.92, F:K.109, F:K.109, F:K.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, W. et al., Serine protease NAL1 exerts pleiotropic functions through degradation of TOPLESS-related corepressor in rice. Nat.Plants (2023)

Release Date

2023-07-12

Peptides

Protein NARROW LEAF 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Protein NARROW LEAF 1