SMTL ID : 7y7o.1

Crystal structure of metallo-endoribonuclease YbeY from Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.121, H.125, H.131 Ligands: CIT.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.121, A:H.125, A:H.131

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 9 residues within 4Å: Chain A: R.59, V.67, I.68, S.69, H.121, H.125, H.131 Ligands: ZN.1, CIT.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.69 Salt bridges: A:R.59, A:H.121, A:H.125, A:H.125, A:H.131, A:H.131 CIT.3: 11 residues within 4Å: Chain A: D.66, V.67, Y.107, F.117, L.118, H.121, H.131, F.141, H.160, H.162 Ligands: CIT.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.141 Salt bridges: A:H.131, A:H.160, A:H.160, A:H.162, A:H.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J. et al., Crystal Structure of the Metallo-Endoribonuclease YbeY from Staphylococcus aureus. J Microbiol Biotechnol. (2023)

Release Date

2023-03-08

Peptides

Endoribonuclease YbeY: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoribonuclease YbeY