SMTL ID : 7y8l.3 (2 other biounits)

Structure of ScIRED-R2-V3 from Streptomyces clavuligerus in complex with 5-(2,5-difluorophenyl)-3,4-dihydro-2H-pyrrole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-dimer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 25 residues within 4Å: Chain A: G.11, L.12, G.13, P.14, M.15, N.34, R.35, T.36, R.39, S.67, L.68, T.69, A.73, L.77, L.93, S.94, S.95, V.120, C.122, P.124, Y.170 Chain B: A.232, R.234, M.237 Ligands: 4IS.2 18 PLIP interactions: 2 interactions with chain B, 16 interactions with chain A Hydrogen bonds: B:A.232, A:L.12, A:M.15, A:N.34, A:N.34, A:R.35, A:T.36, A:T.36, A:L.68, A:T.69, A:S.95 Salt bridges: B:R.234, A:R.35, A:R.39 Water bridges: A:G.13, A:G.16 pi-Cation interactions: A:R.35, A:R.35

2 x 4IS: 5-[2,5-bis(fluoranyl)phenyl]-3,4-dihydro-2~{H}-pyrrole(Non-covalent)

4IS.2: 11 residues within 4Å: Chain A: V.120, T.121, C.122, Y.170, M.174, W.177, W.178 Chain B: F.215, D.233, M.237 Ligands: NAP.1 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.215, B:D.233, A:W.177, A:W.178 4IS.3: 12 residues within 4Å: Chain A: F.215, Y.219, D.233, M.237, F.279 Chain B: C.122, P.123, Y.170, M.174, W.177, W.178 Ligands: NDP.4 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Halogen bonds: A:Y.219, B:Y.170 Hydrophobic interactions: B:W.177, B:W.178

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.4: 27 residues within 4Å: Chain A: A.232, R.234, M.237 Chain B: G.11, L.12, G.13, P.14, M.15, N.34, R.35, T.36, R.39, S.67, L.68, T.69, A.73, A.76, L.77, L.93, S.94, S.95, V.120, C.122, P.123, P.124, Y.170 Ligands: 4IS.3 18 PLIP interactions: 16 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.12, B:M.15, B:N.34, B:R.35, B:R.35, B:R.35, B:T.36, B:T.36, B:L.68, B:T.69, B:T.69, B:S.95, A:A.232 Salt bridges: B:R.35, B:R.39, A:R.234 pi-Cation interactions: B:R.35, B:R.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Q. et al., Engineered Imine Reductase for Larotrectinib Intermediate Manufacture. Acs Catalysis (2022)

Release Date

2023-06-28

Peptides

reductase for protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

reductase for protein

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