SMTL ID : 7yaa.1

Crystal structure analysis of cp3 bound BCLxl

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: S.113, T.117, N.120 Chain C: R.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.117, A:N.120 GOL.3: 4 residues within 4Å: Chain A: R.6 Chain C: S.113, T.117, N.120 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.117, C:N.120

2 x JJ9: N-(2-acetamidoethyl)-4-(4-methanoyl-1,3-thiazol-2-yl)benzamide(Covalent)

JJ9.2: 9 residues within 4Å: Chain A: D.78, V.80, N.81, W.82, R.84, Y.140 Chain B: P.1, I.2, C.10 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.81 Hydrogen bonds: A:W.82 Water bridges: A:N.81 JJ9.4: 9 residues within 4Å: Chain C: D.78, V.80, N.81, W.82, R.84, Y.140 Chain D: P.1, I.2, C.10 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:N.81 Hydrogen bonds: C:W.82 Water bridges: C:N.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, F. et al., Cyclic peptides discriminate BCL-2 and its clinical mutants from BCL-X L by engaging a single-residue discrepancy. Nat Commun (2024)

Release Date

2023-11-15

Peptides

Bcl-2-like protein 1: AC
cp3 peptide: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Bcl-2-like protein 1

cp3 peptide

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