SMTL ID : 7ybd.1

Crystal structure of sliding DNA clamp of Clostridioides difficile

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

homo-dimer

Ligands

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 4 residues within 4Å: Chain A: K.281, S.283, R.285, Y.301 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.281, A:K.281, A:S.283, A:R.285, A:Y.301 PGE.2: 4 residues within 4Å: Chain B: K.281, S.283, R.285, Y.301 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.281, B:K.281, B:S.283, B:R.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hishiki, A. et al., Crystal structure of the sliding DNA clamp from the Gram-positive anaerobic bacterium Clostridioides difficile. J.Biochem. (2022)

Release Date

2022-10-19

Peptides

Beta sliding clamp: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Beta sliding clamp