SMTL ID : 7ybp.1

Crystal structure of FGFR4(V550L) kinase domain with 10z

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x IH7: ~{N}-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-6-bromanyl-5-(hydroxymethyl)-1-(2-morpholin-4-ylethyl)pyrrolo[3,2-b]pyridine-3-carboxamide(Covalent)

IH7.1: 19 residues within 4Å: Chain A: L.29, G.30, V.37, R.39, T.55, A.57, I.90, L.106, E.107, C.108, A.109, A.110, G.112, N.113, R.172, L.175, A.185, D.186 Ligands: SO4.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.29, A:L.29, A:V.37, A:L.175 Hydrogen bonds: A:A.109, A:N.113 Halogen bonds: A:L.29

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.172, T.202, N.204, R.206 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.202, A:T.202, A:N.204, A:N.204, A:R.206 Water bridges: A:R.172, A:R.172 Salt bridges: A:R.172 SO4.3: 2 residues within 4Å: Chain A: R.39 Ligands: IH7.1 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.39, A:R.39, A:R.39 Salt bridges: A:R.39 SO4.4: 4 residues within 4Å: Chain A: K.111, E.178, D.179, N.180 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.178, A:D.179 Salt bridges: A:K.111 SO4.5: 4 residues within 4Å: Chain A: A.190, R.191, G.192, V.193 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.191, A:G.192, A:V.193 Water bridges: A:K.68, A:H.194 SO4.6: 4 residues within 4Å: Chain A: R.119, R.122, G.243, S.244 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.244 Salt bridges: A:R.119, A:R.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, F. et al., Design, Synthesis, and Biological Evaluation of 5-Formyl-pyrrolo[3,2- b ]pyridine-3-carboxamides as New Selective, Potent, and Reversible-Covalent FGFR4 Inhibitors. J.Med.Chem. (2022)

Release Date

2022-11-16

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 4

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