SMTL ID : 7ydb.2 (1 other biounit)

Crystal structure of the P450 BM3 heme domain mutant F87V/T268I in complex with N-imidazolyl-pentanoyl-L-phenylalanine,ethylbenzene and hydroxylamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 28 residues within 4Å: Chain A: K.72, L.78, L.89, V.90, W.99, F.110, I.156, F.264, A.267, G.268, I.271, T.272, L.275, T.330, A.331, F.334, P.395, F.396, G.397, R.401, A.402, C.403, I.404, G.405, F.408, A.409 Ligands: HOA.2, IRV.4 28 PLIP interactions: 28 interactions with chain A, Hydrophobic interactions: A:L.89, A:V.90, A:F.110, A:I.156, A:F.264, A:F.264, A:F.264, A:A.267, A:I.271, A:L.275, A:A.331, A:F.396, A:F.396, A:I.404, A:F.408 Hydrogen bonds: A:R.401 Water bridges: A:K.72, A:K.72, A:H.103, A:S.335, A:S.335, A:S.335, A:N.398, A:Q.400, A:A.402 Salt bridges: A:K.72, A:R.401 Metal complexes: A:C.403

1 x HOA: HYDROXYAMINE(Non-covalent)

HOA.2: 5 residues within 4Å: Chain A: V.90, A.267 Ligands: HEM.1, PYJ.3, IRV.4 No protein-ligand interaction detected (PLIP)

1 x PYJ: PHENYLETHANE(Non-covalent)

PYJ.3: 10 residues within 4Å: Chain A: L.78, V.81, V.90, T.263, I.266, A.267, I.271, L.440 Ligands: HOA.2, IRV.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.78, A:V.81, A:V.81, A:V.90, A:T.263, A:I.266, A:L.440, A:L.440

1 x IRV: (2~{S})-2-(5-imidazol-1-ylpentanoylamino)-3-phenyl-propanoic acid(Non-covalent)

IRV.4: 18 residues within 4Å: Chain A: L.23, P.28, V.29, L.32, Y.54, S.75, A.77, V.90, M.188, L.191, I.271, A.331, A.333, M.357, L.440 Ligands: HEM.1, HOA.2, PYJ.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.23, A:P.28, A:P.28, A:V.29, A:A.77, A:L.191 Hydrogen bonds: A:Y.54, A:S.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J. et al., Regiodivergent and Enantioselective Hydroxylation of C-H bonds by Synergistic Use of Protein Engineering and Exogenous Dual-Functional Small Molecules. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-05-24

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional cytochrome P450/NADPH--P450 reductase

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