SMTL ID : 7yfe.1

In situ structure of polymerase complex of mammalian reovirus in virion

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-15-5-1-1-mer

Ligands

1 x G- C- U: RNA (5'-R(P*GP*CP*U)-3')(Non-covalent)

G-C-U.1: 11 residues within 4Å: Chain P: R.526, S.561, A.562, K.566, K.783, R.797, H.798, N.827 Ligands: A-C-G-A-U-U-A-G-C.3, A-C-G-A-U-U-A-G-C.3, A-C-G-A-U-U-A-G-C.3 Protein-ligand interaction information (PLIP) not available

1 x A- U- C- G- U: RNA (5'-R(P*AP*UP*CP*GP*U)-3')(Non-functional Binders)

A-U-C-G-U.2: 5 residues within 4Å: Ligands: A-C-G-A-U-U-A-G-C.3, A-C-G-A-U-U-A-G-C.3, A-C-G-A-U-U-A-G-C.3, A-C-G-A-U-U-A-G-C.3, A-C-G-A-U-U-A-G-C.3 Protein-ligand interaction information (PLIP) not available

1 x A- C- G- A- U- U- A- G- C: RNA (5'-R(P*AP*CP*GP*AP*UP*UP*AP*GP*C)-3')(Non-covalent)

A-C-G-A-U-U-A-G-C.3: 24 residues within 4Å: Chain P: R.459, G.460, G.461, S.462, A.464, K.490, S.514, M.515, R.518, R.526, I.528, P.530, G.683, S.684, N.807, S.809 Ligands: G-C-U.1, G-C-U.1, G-C-U.1, A-U-C-G-U.2, A-U-C-G-U.2, A-U-C-G-U.2, A-U-C-G-U.2, A-U-C-G-U.2 Protein-ligand interaction information (PLIP) not available

7 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain G: C.183, C.186, H.199, H.203 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:C.183, G:C.186, G:H.203 ZN.5: 5 residues within 4Å: Chain H: C.183, V.185, C.186, H.199, H.203 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.183, H:C.186, H:H.199, H:H.203 ZN.6: 5 residues within 4Å: Chain R: C.183, V.185, C.186, H.199, H.203 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.183, R:C.186, R:H.199, R:H.203 ZN.7: 5 residues within 4Å: Chain S: C.183, V.185, C.186, H.199, H.203 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:C.183, S:C.186, S:H.199, S:H.203 ZN.8: 4 residues within 4Å: Chain T: C.183, C.186, H.199, H.203 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:C.183, T:C.186, T:H.199, T:H.203 ZN.9: 4 residues within 4Å: Chain U: C.183, C.186, H.199, H.203 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:C.183, U:C.186, U:H.199, U:H.203 ZN.10: 4 residues within 4Å: Chain V: C.183, C.186, H.199, H.203 4 PLIP interactions: 4 interactions with chain V Metal complexes: V:C.183, V:C.186, V:H.199, V:H.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bao, K. et al., In situ structures of polymerase complex of mammalian reovirus illuminate RdRp activation and transcription regulation. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2023-03-29

Peptides

RNA helicase: ABCDEFGHIJRSTUV
Lambda-2 protein: KLMNO
RNA-directed RNA polymerase: P
Mu-2 protein: Q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
5

F
A

G
B

H
C

I
D

J
E

R
a

S
b

T
c

U
d

V
e

K
H

L
I

M
J

N
K

O
L

P
R

Q
U

RNA helicase

Lambda-2 protein

RNA-directed RNA polymerase

Mu-2 protein

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